gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
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@ -13793,3 +13793,34 @@ sequencing data.")
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common tasks in the analysis of omics data, leveraging and enhancing features
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provided by Bioconductor packages.")
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(license license:gpl3+))))
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(define-public r-cssam
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(let ((revision "1")
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(commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
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(package
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(name "r-cssam")
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(version (git-version "1.4" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/shenorrLab/csSAM.git")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-formula" ,r-formula)
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("r-ggplot2" ,r-ggplot2)
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("r-pkgmaker" ,r-pkgmaker)
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("r-plyr" ,r-plyr)
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("r-rngtools" ,r-rngtools)
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("r-scales" ,r-scales)))
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(home-page "https://github.com/shenorrLab/csSAM/")
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(synopsis "Cell type-specific statistical analysis of microarray")
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(description "This package implements the method csSAM that computes
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cell-specific differential expression from measured cell proportions using
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SAM.")
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;; Any version
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(license license:lgpl2.1+))))
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