gnu: Add r-cssam.

* gnu/packages/bioinformatics.scm (r-cssam): New variable.
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Ricardo Wurmus 2018-09-24 13:23:44 +02:00 committed by Ricardo Wurmus
parent a434730f2e
commit 28829c040f
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@ -13793,3 +13793,34 @@ sequencing data.")
common tasks in the analysis of omics data, leveraging and enhancing features
provided by Bioconductor packages.")
(license license:gpl3+))))
(define-public r-cssam
(let ((revision "1")
(commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
(package
(name "r-cssam")
(version (git-version "1.4" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/shenorrLab/csSAM.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-formula" ,r-formula)
("r-ggplot2" ,r-ggplot2)
("r-pkgmaker" ,r-pkgmaker)
("r-plyr" ,r-plyr)
("r-rngtools" ,r-rngtools)
("r-scales" ,r-scales)))
(home-page "https://github.com/shenorrLab/csSAM/")
(synopsis "Cell type-specific statistical analysis of microarray")
(description "This package implements the method csSAM that computes
cell-specific differential expression from measured cell proportions using
SAM.")
;; Any version
(license license:lgpl2.1+))))