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gnu: r-seurat: Update to 3.0.0. 

* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
This commit is contained in:
Ricardo Wurmus 2019-04-19 14:44:10 +02:00
parent 9b86fea05f
commit 296da6e624
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GPG Key ID: 197A5888235FACAC
1 changed files with 10 additions and 15 deletions
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@ -9438,40 +9438,33 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(define-public r-seurat (define-public r-seurat
(package (package
(name "r-seurat") (name "r-seurat")
(version "2.3.4") (version "3.0.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (cran-uri "Seurat" version)) (uri (cran-uri "Seurat" version))
(sha256 (sha256
(base32 (base32
"0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd")))) "183lm2wk0i3g114jbdf7pb4ssizr48qzqv3cknbsiackr8kvpsvc"))))
(properties `((upstream-name . "Seurat"))) (properties `((upstream-name . "Seurat")))
(build-system r-build-system) (build-system r-build-system)
(propagated-inputs (propagated-inputs
`(("r-ape" ,r-ape) `(("r-ape" ,r-ape)
("r-cluster" ,r-cluster) ("r-cluster" ,r-cluster)
("r-cowplot" ,r-cowplot) ("r-cowplot" ,r-cowplot)
("r-dosnow" ,r-dosnow)
("r-dplyr" ,r-dplyr)
("r-dtw" ,r-dtw)
("r-fitdistrplus" ,r-fitdistrplus) ("r-fitdistrplus" ,r-fitdistrplus)
("r-foreach" ,r-foreach) ("r-future" ,r-future)
("r-fpc" ,r-fpc) ("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2) ("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-ggridges" ,r-ggridges) ("r-ggridges" ,r-ggridges)
("r-gplots" ,r-gplots)
("r-hdf5r" ,r-hdf5r)
("r-hmisc" ,r-hmisc)
("r-httr" ,r-httr)
("r-ica" ,r-ica) ("r-ica" ,r-ica)
("r-igraph" ,r-igraph) ("r-igraph" ,r-igraph)
("r-irlba" ,r-irlba) ("r-irlba" ,r-irlba)
("r-lars" ,r-lars) ("r-kernsmooth" ,r-kernsmooth)
("r-lmtest" ,r-lmtest) ("r-lmtest" ,r-lmtest)
("r-mass" ,r-mass) ("r-mass" ,r-mass)
("r-matrix" ,r-matrix) ("r-matrix" ,r-matrix)
("r-metap" ,r-metap) ("r-metap" ,r-metap)
("r-mixtools" ,r-mixtools)
("r-pbapply" ,r-pbapply) ("r-pbapply" ,r-pbapply)
("r-plotly" ,r-plotly) ("r-plotly" ,r-plotly)
("r-png" ,r-png) ("r-png" ,r-png)
@ -9480,12 +9473,14 @@ and irregular enzymatic cleavages, mass measurement accuracy, etc.")
("r-rcpp" ,r-rcpp) ("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen) ("r-rcppeigen" ,r-rcppeigen)
("r-rcppprogress" ,r-rcppprogress) ("r-rcppprogress" ,r-rcppprogress)
("r-reshape2" ,r-reshape2)
("r-reticulate" ,r-reticulate) ("r-reticulate" ,r-reticulate)
("r-rlang" ,r-rlang)
("r-rocr" ,r-rocr) ("r-rocr" ,r-rocr)
("r-rsvd" ,r-rsvd)
("r-rtsne" ,r-rtsne) ("r-rtsne" ,r-rtsne)
("r-scales" ,r-scales)
("r-sctransform" ,r-sctransform)
("r-sdmtools" ,r-sdmtools) ("r-sdmtools" ,r-sdmtools)
("r-tidyr" ,r-tidyr)
("r-tsne" ,r-tsne))) ("r-tsne" ,r-tsne)))
(home-page "http://www.satijalab.org/seurat") (home-page "http://www.satijalab.org/seurat")
(synopsis "Seurat is an R toolkit for single cell genomics") (synopsis "Seurat is an R toolkit for single cell genomics")