From 2a360cf6acde00f96dcca8bf6dcc2f4fa1563da1 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 15 Sep 2019 22:54:21 +0200
Subject: [PATCH] gnu: Add r-wavetiling.

* gnu/packages/bioconductor.scm (r-wavetiling): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 807ddedc75..ec3451b704 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5975,3 +5975,34 @@ strength of GenomeGraphs is to plot different data types such as array CGH,
 gene expression, sequencing and other data, together in one plot using the
 same genome coordinate system.")
     (license license:artistic2.0)))
+
+(define-public r-wavetiling
+  (package
+    (name "r-wavetiling")
+    (version "1.26.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "waveTiling" version))
+       (sha256
+        (base32
+         "0l0saa0myabpq2rl9dq70zff8jpxr3mkanxlj65hc41f0m5xllir"))))
+    (properties `((upstream-name . "waveTiling")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-affy" ,r-affy)
+       ("r-biobase" ,r-biobase)
+       ("r-biostrings" ,r-biostrings)
+       ("r-genomegraphs" ,r-genomegraphs)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-oligo" ,r-oligo)
+       ("r-oligoclasses" ,r-oligoclasses)
+       ("r-preprocesscore" ,r-preprocesscore)
+       ("r-waveslim" ,r-waveslim)))
+    (home-page "https://r-forge.r-project.org/projects/wavetiling/")
+    (synopsis "Wavelet-based models for tiling array transcriptome analysis")
+    (description
+     "This package is designed to conduct transcriptome analysis for tiling
+arrays based on fast wavelet-based functional models.")
+    (license license:gpl2+)))