gnu: Add r-seqgl.
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
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@ -7613,6 +7613,36 @@ must be built and this dictionary can be used for determining kernels for DNA
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Sequences.")
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(license license:gpl2+))))
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(define-public r-seqgl
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(package
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(name "r-seqgl")
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(version "1.1.4")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/ManuSetty/SeqGL/"
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"archive/" version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biostrings" ,r-biostrings)
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("r-chipkernels" ,r-chipkernels)
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("r-genomicranges" ,r-genomicranges)
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("r-spams" ,r-spams)
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("r-wgcna" ,r-wgcna)
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("r-fastcluster" ,r-fastcluster)))
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(home-page "https://github.com/ManuSetty/SeqGL")
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(synopsis "Group lasso for Dnase/ChIP-seq data")
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(description "SeqGL is a group lasso based algorithm to extract
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transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles.
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This package presents a method which uses group lasso to discriminate between
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bound and non bound genomic regions to accurately identify transcription
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factors bound at the specific regions.")
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(license license:gpl2+)))
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(define-public emboss
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(package
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(name "emboss")
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