gnu: Add hdf-java.
* gnu/packages/maths.scm (hdf-java): New variable.
This commit is contained in:
Thomas Danckaert
parent
88f256a192
commit
2fd26d055a
|
|
@ -14,7 +14,7 @@
|
|||
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
|
||||
;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org>
|
||||
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
|
||||
;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
|
||||
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
|
||||
;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
|
||||
;;; Copyright © 2017 ng0 <contact.ng0@cryptolab.net>
|
||||
;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
|
||||
|
|
@ -70,6 +70,7 @@
|
|||
#:use-module (gnu packages graphviz)
|
||||
#:use-module (gnu packages gtk)
|
||||
#:use-module (gnu packages image)
|
||||
#:use-module (gnu packages java)
|
||||
#:use-module (gnu packages less)
|
||||
#:use-module (gnu packages lisp)
|
||||
#:use-module (gnu packages logging)
|
||||
|
|
@ -743,6 +744,124 @@ extremely large and complex data collections.")
|
|||
(license (license:x11-style
|
||||
"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
|
||||
|
||||
(define-public hdf-java
|
||||
(package
|
||||
(name "hdf-java")
|
||||
(version "3.3.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfjni-"
|
||||
version "/src/CMake-hdfjava-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32 "0m1gp2aspcblqzmpqbdpfp6giskws85ds6p5gz8sx7asyp7wznpr"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet ; Make sure we don't use the bundled sources and binaries.
|
||||
`(begin
|
||||
(for-each delete-file
|
||||
(list "SZip.tar.gz" "ZLib.tar.gz" "JPEG8d.tar.gz"
|
||||
"HDF4.tar.gz" "HDF5.tar.gz"))
|
||||
(delete-file-recursively ,(string-append "hdfjava-" version "/lib"))))))
|
||||
(build-system gnu-build-system)
|
||||
(native-inputs
|
||||
`(("jdk" ,icedtea "jdk")
|
||||
("automake" ,automake) ; For up to date 'config.guess' and 'config.sub'.
|
||||
;; For tests:
|
||||
("hamcrest-core" ,java-hamcrest-core)
|
||||
("junit" ,java-junit)
|
||||
("slf4j-simple" ,java-slf4j-simple)))
|
||||
(inputs
|
||||
`(("hdf4" ,hdf4)
|
||||
("hdf5" ,hdf5)
|
||||
("zlib" ,zlib)
|
||||
("libjpeg" ,libjpeg)
|
||||
("slf4j-api" ,java-slf4j-api)))
|
||||
(arguments
|
||||
`(#:configure-flags
|
||||
(list (string-append "--target=" ,(or (%current-target-system) (%current-system)))
|
||||
(string-append "--with-jdk=" (assoc-ref %build-inputs "jdk") "/include,"
|
||||
(assoc-ref %build-inputs "jdk") "/lib" )
|
||||
(string-append "--with-hdf4=" (assoc-ref %build-inputs "hdf4") "/lib")
|
||||
(string-append "--with-hdf5=" (assoc-ref %build-inputs "hdf5") "/lib"))
|
||||
|
||||
#:make-flags
|
||||
(list (string-append "HDFLIB=" (assoc-ref %build-inputs "hdf4") "/lib")
|
||||
(string-append "HDF5LIB=" (assoc-ref %build-inputs "hdf5") "/lib")
|
||||
(string-append "ZLIB=" (assoc-ref %build-inputs "zlib") "/lib/libz.so")
|
||||
(string-append "JPEGLIB="
|
||||
(assoc-ref %build-inputs "libjpeg") "/lib/libjpeg.so")
|
||||
"LLEXT=so")
|
||||
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-before 'configure 'chdir-to-source
|
||||
(lambda _ (chdir ,(string-append "hdfjava-" version))))
|
||||
(add-before 'configure 'patch-build
|
||||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||||
(substitute* "configure"
|
||||
(("COPT=\"") "COPT=\"-O2 ") ; CFLAGS is ignored in Makefiles
|
||||
(("/bin/cat") (which "cat")))
|
||||
;; Set classpath for compilation
|
||||
(substitute* '("hdf/hdf5lib/Makefile.in"
|
||||
"hdf/hdf5lib/exceptions/Makefile.in"
|
||||
"hdf/hdflib/Makefile.in")
|
||||
(("\\$\\(TOP\\)/lib/slf4j-api-1\\.7\\.5\\.jar")
|
||||
(string-append (assoc-ref inputs "slf4j-api")
|
||||
"/share/java/slf4j-api.jar")))
|
||||
;; Replace outdated config.sub and config.guess:
|
||||
(with-directory-excursion "config"
|
||||
(for-each (lambda (file)
|
||||
(copy-file
|
||||
(string-append (assoc-ref inputs "automake")
|
||||
"/share/automake-1.15/" file) file))
|
||||
'("config.sub" "config.guess")))
|
||||
(mkdir-p (string-append (assoc-ref outputs "out")))
|
||||
;; Set classpath for tests
|
||||
(let* ((build-dir (getcwd))
|
||||
(lib (string-append build-dir "/lib"))
|
||||
(jhdf (string-append lib "/jhdf.jar"))
|
||||
(jhdf5 (string-append lib "/jhdf5.jar"))
|
||||
(testjars
|
||||
(map (lambda (i)
|
||||
(string-append (assoc-ref inputs i)
|
||||
"/share/java/" i ".jar"))
|
||||
'("junit" "hamcrest-core" "slf4j-api" "slf4j-simple")))
|
||||
(class-path
|
||||
(string-join `("." ,build-dir ,jhdf ,jhdf5 ,@testjars) ":")))
|
||||
|
||||
(substitute* '("test/hdf5lib/Makefile.in"
|
||||
"test/hdf5lib/junit.sh.in"
|
||||
"examples/runExample.sh.in")
|
||||
(("/usr/bin/test")
|
||||
(string-append (assoc-ref inputs "coreutils")
|
||||
"/bin/test"))
|
||||
(("/usr/bin/uname")
|
||||
(string-append (assoc-ref inputs "coreutils")
|
||||
"/bin/uname"))
|
||||
(("CLASSPATH=[^\n]*")
|
||||
(string-append "CLASSPATH=" class-path)))
|
||||
(setenv "CLASSPATH" class-path))
|
||||
#t))
|
||||
(add-before 'check 'build-examples
|
||||
(lambda _
|
||||
(zero? (apply system* `("javac"
|
||||
,@(find-files "examples" ".*\\.java")))))))
|
||||
|
||||
#:parallel-build? #f
|
||||
|
||||
#:parallel-tests? #f ))
|
||||
(home-page "https://support.hdfgroup.org/products/java")
|
||||
(synopsis "Java interface for the HDF4 and HDF5 libraries")
|
||||
(description "Java HDF Interface (JHI) and Java HDF5 Interface (JHI5) use
|
||||
the Java Native Interface to wrap the HDF4 and HDF5 libraries, which are
|
||||
implemented in C.")
|
||||
|
||||
;; BSD-style license:
|
||||
(license (license:x11-style
|
||||
"https://support.hdfgroup.org/ftp/HDF5/hdf-java\
|
||||
/current/src/unpacked/COPYING"))))
|
||||
|
||||
(define-public hdf-eos2
|
||||
(package
|
||||
(name "hdf-eos2")
|
||||
|
|
|
|||
Loading…
Reference in New Issue