gnu: Add r-bumphunter.
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
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@ -2200,3 +2200,37 @@ expressed genes and estimation of the @dfn{False Discovery Rate} (FDR) using
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both the Significance Analysis of Microarrays (SAM) and the @dfn{Empirical
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Bayes Analyses of Microarrays} (EBAM).")
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(license license:lgpl2.0+)))
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(define-public r-bumphunter
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(package
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(name "r-bumphunter")
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(version "1.24.5")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bumphunter" version))
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(sha256
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(base32
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"1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocgenerics" ,r-biocgenerics)
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("r-dorng" ,r-dorng)
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("r-foreach" ,r-foreach)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-iterators" ,r-iterators)
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("r-limma" ,r-limma)
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("r-locfit" ,r-locfit)
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("r-matrixstats" ,r-matrixstats)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://github.com/ririzarr/bumphunter")
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(synopsis "Find bumps in genomic data")
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(description
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"This package provides tools for finding bumps in genomic data in order
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to identify differentially methylated regions in epigenetic epidemiology
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studies.")
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(license license:artistic2.0)))
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