gnu: Add Infernal.
* gnu/packages/bioinformatics.scm (infernal): New variable.
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@ -4835,6 +4835,32 @@ data in the form of VCF files.")
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;; at https://vcftools.github.io/license.html
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;; at https://vcftools.github.io/license.html
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(license license:lgpl3)))
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(license license:lgpl3)))
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(define-public infernal
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(package
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(name "infernal")
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(version "1.1.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "http://eddylab.org/software/infernal/"
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"infernal-" version ".tar.gz"))
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(sha256
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(base32
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"0sr2hiz3qxfwqpz3whxr6n82p3x27336v3f34iqznp10hks2935c"))))
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(build-system gnu-build-system)
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(native-inputs
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`(("perl" ,perl))) ; for tests
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(home-page "http://eddylab.org/infernal/")
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(synopsis "Inference of RNA alignments")
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(description "Infernal (\"INFERence of RNA ALignment\") is a tool for
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searching DNA sequence databases for RNA structure and sequence similarities.
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It is an implementation of a special case of profile stochastic context-free
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grammars called @dfn{covariance models} (CMs). A CM is like a sequence
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profile, but it scores a combination of sequence consensus and RNA secondary
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structure consensus, so in many cases, it is more capable of identifying RNA
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homologs that conserve their secondary structure more than their primary
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sequence.")
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(license license:bsd-3)))
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(define-public r-vegan
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(define-public r-vegan
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(package
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(package
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(name "r-vegan")
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(name "r-vegan")
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