From 363ee7a3f4a489c1904616340e2b3db46ffc86c5 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 21 Mar 2018 11:52:56 +0100
Subject: [PATCH] gnu: pigx-chipseq: Update to 0.0.10.

* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
---
 gnu/packages/bioinformatics.scm | 18 +++++++++++++-----
 1 file changed, 13 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5fdf7f29d6..0fe0624aff 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12747,7 +12747,7 @@ expression report comparing samples in an easily configurable manner.")
 (define-public pigx-chipseq
   (package
     (name "pigx-chipseq")
-    (version "0.0.9")
+    (version "0.0.10")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -12755,7 +12755,7 @@ expression report comparing samples in an easily configurable manner.")
                                   "/pigx_chipseq-" version ".tar.gz"))
               (sha256
                (base32
-                "14ym5fmc16xil584jlhf66ldq38smb6jbcfwnjvqmi7v0vzybdsw"))))
+                "13w99bkr0w4j28ms0yzpl1x6fkpdqay0vh495q3x20bcilsjwnf1"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; parts of the tests rely on access to the network
@@ -12774,22 +12774,30 @@ expression report comparing samples in an easily configurable manner.")
        ("coreutils" ,coreutils)
        ("r-minimal" ,r-minimal)
        ("r-argparser" ,r-argparser)
+       ("r-biocparallel" ,r-biocparallel)
+       ("r-biostrings" ,r-biostrings)
        ("r-chipseq" ,r-chipseq)
        ("r-data-table" ,r-data-table)
+       ("r-dplyr" ,r-dplyr)
        ("r-genomation" ,r-genomation)
+       ("r-genomicalignments" ,r-genomicalignments)
        ("r-genomicranges" ,r-genomicranges)
+       ("r-rsamtools" ,r-rsamtools)
        ("r-rtracklayer" ,r-rtracklayer)
-       ("r-rcas" ,r-rcas)
+       ("r-s4vectors" ,r-s4vectors)
        ("r-stringr" ,r-stringr)
+       ("r-tibble" ,r-tibble)
+       ("r-tidyr" ,r-tidyr)
        ("r-jsonlite" ,r-jsonlite)
        ("r-heatmaply" ,r-heatmaply)
+       ("r-htmlwidgets" ,r-htmlwidgets)
        ("r-ggplot2" ,r-ggplot2)
        ("r-plotly" ,r-plotly)
+       ("r-rmarkdown" ,r-rmarkdown)
        ("python-wrapper" ,python-wrapper)
-       ("python-magic" ,python-magic)
        ("python-pyyaml" ,python-pyyaml)
+       ("python-magic" ,python-magic)
        ("python-xlrd" ,python-xlrd)
-       ("snakemake" ,snakemake)
        ("trim-galore" ,trim-galore)
        ("macs" ,macs)
        ("multiqc" ,multiqc)