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gnu: r-variantannotation: Update to 1.20.0. 

* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
This commit is contained in:
Ricardo Wurmus 2016-10-26 08:54:23 +02:00
parent 5e48005fa9
commit 37d96f1dde
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1 changed files with 8 additions and 2 deletions
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@ -6188,27 +6188,33 @@ CAGE.")
(define-public r-variantannotation (define-public r-variantannotation
(package (package
(name "r-variantannotation") (name "r-variantannotation")
(version "1.18.7") (version "1.20.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version)) (uri (bioconductor-uri "VariantAnnotation" version))
(sha256 (sha256
(base32 (base32
"002kif2c66wbcng953m3g1jys7w1lgz7hh3zsk4jlnhc20jdv1vj")))) "1lwzfgahz8ipwli73kcfqb18y6adi129hap1gnycnj3980m54i8q"))))
(properties (properties
`((upstream-name . "VariantAnnotation"))) `((upstream-name . "VariantAnnotation")))
(inputs (inputs
`(("zlib" ,zlib))) `(("zlib" ,zlib)))
(propagated-inputs (propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi) `(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics) ("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome) ("r-bsgenome" ,r-bsgenome)
("r-dbi" ,r-dbi) ("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb) ("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures) ("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges) ("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-summarizedexperiment" ,r-summarizedexperiment) ("r-summarizedexperiment" ,r-summarizedexperiment)
("r-rsamtools" ,r-rsamtools) ("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)
("r-zlibbioc" ,r-zlibbioc))) ("r-zlibbioc" ,r-zlibbioc)))
(build-system r-build-system) (build-system r-build-system)
(home-page "https://bioconductor.org/packages/VariantAnnotation") (home-page "https://bioconductor.org/packages/VariantAnnotation")