gnu: bioawk: Fetch sources from git.
* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git.
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@ -563,12 +563,14 @@ independently with transcriptional regulation.")
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(name "bioawk")
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(version "1.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/lh3/bioawk/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32 "1daizxsk17ahi9n58fj8vpgwyhzrzh54bzqhanjanp88kgrz7gjw"))))
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/lh3/bioawk.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1pxc3zdnirxbf9a0az698hd8xdik7qkhypm7v6hn922x8y9qmspm"))))
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(build-system gnu-build-system)
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(inputs
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`(("zlib" ,zlib)))
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@ -582,13 +584,13 @@ independently with transcriptional regulation.")
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(modify-phases %standard-phases
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(delete 'configure) ; There is no configure phase.
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(man (string-append out "/share/man/man1")))
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(mkdir-p man)
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(copy-file "awk.1" (string-append man "/bioawk.1"))
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(install-file "bioawk" bin)))))))
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(man (string-append out "/share/man/man1")))
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(mkdir-p man)
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(copy-file "awk.1" (string-append man "/bioawk.1"))
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(install-file "bioawk" bin)))))))
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(home-page "https://github.com/lh3/bioawk")
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(synopsis "AWK with bioinformatics extensions")
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(description "Bioawk is an extension to Brian Kernighan's awk, adding the
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