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gnu: bioawk: Fetch sources from git. 

* gnu/packages/bioinformatics.scm (bioawk)[source]: Fetch from git.
master
Ricardo Wurmus 2018-11-07 19:06:30 +01:00
parent 20ee3e8b76
commit 383cb7b8e6
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GPG Key ID: 197A5888235FACAC
1 changed files with 15 additions and 13 deletions
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gnu/packages/bioinformatics.scm
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@ -563,12 +563,14 @@ independently with transcriptional regulation.")
(name "bioawk")
(version "1.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/lh3/bioawk/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1daizxsk17ahi9n58fj8vpgwyhzrzh54bzqhanjanp88kgrz7gjw"))))
(method git-fetch)
(uri (git-reference
(url "https://github.com/lh3/bioawk.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1pxc3zdnirxbf9a0az698hd8xdik7qkhypm7v6hn922x8y9qmspm"))))
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)))
@ -582,13 +584,13 @@ independently with transcriptional regulation.")
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(man (string-append out "/share/man/man1")))
(mkdir-p man)
(copy-file "awk.1" (string-append man "/bioawk.1"))
(install-file "bioawk" bin)))))))
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(man (string-append out "/share/man/man1")))
(mkdir-p man)
(copy-file "awk.1" (string-append man "/bioawk.1"))
(install-file "bioawk" bin)))))))
(home-page "https://github.com/lh3/bioawk")
(synopsis "AWK with bioinformatics extensions")
(description "Bioawk is an extension to Brian Kernighan's awk, adding the