From 3dad6087beaef0ff5343858f26b0c1ec7e328c16 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 10:29:25 +0100 Subject: [PATCH] gnu: Add r-org-dr-eg-db. * gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ae9d7070c3..ed950d5687 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -170,6 +170,32 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default." ) (license license:artistic2.0))) +(define-public r-org-dr-eg-db + (package + (name "r-org-dr-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Dr.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx")))) + (properties + `((upstream-name . "org.Dr.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Dr.eg.db/") + (synopsis "Annotation for Zebrafish") + (description + "This package provides genome wide annotations for Zebrafish, primarily +based on mapping using Entrez Gene identifiers.") + (license license:artistic2.0))) + (define-public r-genelendatabase (package (name "r-genelendatabase")