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gnu: Add r-rjava. 

* gnu/packages/cran.scm (r-rjava): New variable.
This commit is contained in:
Ricardo Wurmus 2019-03-25 17:19:47 +01:00
parent 4f8b1fb35f
commit 3f6e6e9857
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gnu/packages/cran.scm
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@ -54,8 +54,10 @@
#:use-module (gnu packages graph) #:use-module (gnu packages graph)
#:use-module (gnu packages gtk) #:use-module (gnu packages gtk)
#:use-module (gnu packages haskell) #:use-module (gnu packages haskell)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image) #:use-module (gnu packages image)
#:use-module (gnu packages imagemagick) #:use-module (gnu packages imagemagick)
#:use-module (gnu packages java)
#:use-module (gnu packages javascript) #:use-module (gnu packages javascript)
#:use-module (gnu packages lisp) #:use-module (gnu packages lisp)
#:use-module (gnu packages machine-learning) #:use-module (gnu packages machine-learning)
@ -63,6 +65,7 @@
#:use-module (gnu packages mpi) #:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision) #:use-module (gnu packages multiprecision)
#:use-module (gnu packages networking) #:use-module (gnu packages networking)
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages python) #:use-module (gnu packages python)
@ -12871,3 +12874,50 @@ write HTML reports for statistical analysis. Finally, a driver for Sweave
allows to parse HTML flat files containing R code and to automatically write allows to parse HTML flat files containing R code and to automatically write
the corresponding outputs (tables and graphs).") the corresponding outputs (tables and graphs).")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-rjava
(package
(name "r-rjava")
(version "0.9-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "rJava" version))
(sha256
(base32
"0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9"))))
(properties `((upstream-name . "rJava")))
(build-system r-build-system)
(arguments
`(#:modules ((guix build utils)
(guix build r-build-system)
(ice-9 match))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'set-JAVA_HOME
(lambda* (#:key inputs #:allow-other-keys)
(let ((jdk (assoc-ref inputs "jdk")))
(setenv "JAVA_HOME" jdk)
(setenv "JAVA" (which "java"))
(setenv "JAR" (which "jar"))
(setenv "JAVAC" (which "javac"))
(setenv "JAVAH" (which "javah"))
(setenv "JAVA_CPPFLAGS"
(string-append "-I" jdk "/include "
"-I" jdk "/include/linux"))
(match (find-files (string-append jdk "/jre/lib/") "libjvm.so")
((lib) (setenv "JAVA_LIBS" lib))
(_ (error "Could not find libjvm.so"))))
#t)))))
(inputs
`(("icu4c" ,icu4c)
("jdk" ,icedtea-8 "jdk")
("pcre" ,pcre)
("zlib" ,zlib)))
(home-page "http://www.rforge.net/rJava/")
(synopsis "Low-Level R to Java interface")
(description
"This package provides a low-level interface to the Java VM very much
like .C/.Call and friends. It allows the creation of objects, calling methods
and accessing fields.")
(license license:gpl2)))