Merge branch 'python-tests'

gnu/local.mk

@@ -856,14 +856,18 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3-search-paths.patch		\
   %D%/packages/patches/python-3.4-fix-tests.patch		\
   %D%/packages/patches/python-3.5-fix-tests.patch		\
+  %D%/packages/patches/python-dendropy-fix-tests.patch		\
   %D%/packages/patches/python-file-double-encoding-bug.patch	\
   %D%/packages/patches/python-fix-tests.patch			\
   %D%/packages/patches/python-parse-too-many-fields.patch	\
   %D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch	\
   %D%/packages/patches/python-statsmodels-fix-tests.patch	\
   %D%/packages/patches/python-configobj-setuptools.patch	\
+  %D%/packages/patches/python-fake-factory-fix-build-32bit.patch	\
   %D%/packages/patches/python-paste-remove-website-test.patch	\
   %D%/packages/patches/python-paste-remove-timing-test.patch	\
+  %D%/packages/patches/python-pygit2-disable-network-tests.patch	\
+  %D%/packages/patches/python-pyopenssl-skip-network-test.patch	\
   %D%/packages/patches/python-pycrypto-CVE-2013-7459.patch	\
   %D%/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \
   %D%/packages/patches/python-pygpgme-fix-pinentry-tests.patch	\

gnu/packages/admin.scm

@@ -1699,15 +1699,29 @@ throughput (in the same interval).")
                (base32
                 "04q2cn8c83f6z6wn1scla1ilrpi5ssjc64987hvmwfvwvb82bvkp"))))
     (build-system python-build-system)
-    (inputs
+    (arguments
+     '(#:tests? #f))
+       ;; FIXME: 10 test failures. Some require newer pytest (> 2.9.2).
+       ;; Others need more work. Un-comment the below to run the tests.
+       ;; #:phases
+       ;; (modify-phases %standard-phases
+       ;;   (replace 'check
+       ;;     (lambda _
+       ;;       ;; Some tests need write access to $HOME.
+       ;;       (setenv "HOME" "/tmp")
+       ;;       (zero? (system* "py.test" "-v")))))))
+    (propagated-inputs
      `(("python-colorama" ,python-colorama)
        ("python-decorator" ,python-decorator)
        ("python-psutil" ,python-psutil)
        ("python-six" ,python-six)))
     (native-inputs
-     ;; Requires setuptools >= 17.1 due to some features used, while our
+     `(("python-mock" ,python-mock)
-     ;; python currently only includes 12.0. TODO: Remove this input.
+       ("python-pytest" ,python-pytest)
-     `(("python-setuptools" ,python-setuptools)))
+       ("python-pytest-mock" ,python-pytest-mock)
+       ;; Requires setuptools >= 17.1 due to some features used, while our
+       ;; python currently only includes 12.0. TODO: Remove this input.
+       ("python-setuptools" ,python-setuptools)))
     (home-page "https://github.com/nvbn/thefuck")
     (synopsis "Correct mistyped console command")
     (description

gnu/packages/backup.scm

@@ -67,6 +67,7 @@
     (build-system python-build-system)
     (native-inputs
      `(("util-linux" ,util-linux)     ;setsid command, for the tests
+       ("par2cmdline" ,par2cmdline)
        ("python-pexpect" ,python2-pexpect)
        ("mock" ,python2-mock)))
     (propagated-inputs
@@ -83,16 +84,18 @@
        #:test-target "test"
        #:phases
        (modify-phases %standard-phases
-         (add-before
+         (add-before 'build 'patch-source
-          'build 'patch-source ; embed gpg store name
+           (lambda* (#:key inputs #:allow-other-keys)
-          (lambda* (#:key inputs #:allow-other-keys)
+             ;; embed gpg store name
-            (substitute* "duplicity/gpginterface.py"
+             (substitute* "duplicity/gpginterface.py"
-              (("self.call = 'gpg'")
+               (("self.call = 'gpg'")
-               (string-append "self.call = '" (assoc-ref inputs "gnupg") "/bin/gpg'")))))
+                (string-append "self.call = '" (assoc-ref inputs "gnupg") "/bin/gpg'")))
+             (substitute* '("testing/functional/__init__.py"
+                            "testing/overrides/bin/lftp")
+               (("/bin/sh") (which "sh")))
+             #t))
          (add-before 'check 'check-setup
            (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "testing/functional/__init__.py"
-               (("/bin/sh") (which "sh")))
              (setenv "HOME" (getcwd)) ;gpg needs to write to $HOME
              (setenv "TZDIR"          ;some timestamp checks need TZDIR
                      (string-append (assoc-ref inputs "tzdata")

gnu/packages/bioinformatics.scm

@@ -499,6 +499,9 @@ provides the Ribotaper pipeline.")
        ("python-matplotlib" ,python2-matplotlib)
        ("python-scipy" ,python2-scipy)
        ("python-statsmodels" ,python2-statsmodels)))
+    (native-inputs
+     `(("python-mock" ,python2-mock)
+       ("python-nose" ,python2-nose)))
     (home-page "http://public.bmi.inf.ethz.ch/user/zhongy/RiboDiff/")
     (synopsis "Detect translation efficiency changes from ribosome footprints")
     (description "RiboDiff is a statistical tool that detects the protein
@@ -604,6 +607,8 @@ Python.")
       ("python-future" ,python-future)
       ("python-click" ,python-click)
       ("python-h5py" ,python-h5py)))
+   (native-inputs
+    `(("python-nose" ,python-nose)))
    (home-page "http://www.biom-format.org")
    (synopsis "Biological Observation Matrix (BIOM) format utilities")
    (description
@@ -1602,6 +1607,7 @@ databases.")
        ("python-scipy" ,python2-scipy)))
     (native-inputs
      `(("python-mock" ,python2-mock)   ; for tests
+       ("python-nose" ,python2-nose)   ; for tests
        ("python-pytz" ,python2-pytz))) ; for tests
     (home-page "https://github.com/YeoLab/clipper")
     (synopsis "CLIP peak enrichment recognition")
@@ -1978,7 +1984,8 @@ accessing bigWig files.")
        (uri (pypi-uri "DendroPy" version))
        (sha256
         (base32
-         "15c7s3d5gf19ljsxvq5advaa752wfi7pwrdjyhzmg85hccyvp47p"))))
+         "15c7s3d5gf19ljsxvq5advaa752wfi7pwrdjyhzmg85hccyvp47p"))
+       (patches (search-patches "python-dendropy-fix-tests.patch"))))
     (build-system python-build-system)
     (home-page "http://packages.python.org/DendroPy/")
     (synopsis "Library for phylogenetics and phylogenetic computing")
@@ -2030,6 +2037,7 @@ trees (phylogenies) and characters.")
        ("python-pybigwig" ,python2-pybigwig)))
     (native-inputs
      `(("python-mock" ,python2-mock)   ;for tests
+       ("python-nose" ,python2-nose)   ;for tests
        ("python-pytz" ,python2-pytz))) ;for tests
     (home-page "https://github.com/fidelram/deepTools")
     (synopsis "Tools for normalizing and visualizing deep-sequencing data")
@@ -2969,28 +2977,10 @@ data.  It also provides the bgzip, htsfile, and tabix utilities.")
                 "1k3x44biak00aiv3hpm1yd6nn4hhp7n0qnbs3zh2q9sw7qr1qj5r"))))
     (build-system python-build-system)
     (arguments
-     `(#:phases
+     `(#:tests? #f)) ; FIXME: "ImportError: No module named 'utility'"
-       (modify-phases %standard-phases
+    (propagated-inputs
-         (add-after
-          'install 'wrap-program
-          (lambda* (#:key inputs outputs #:allow-other-keys)
-            (let* ((out (assoc-ref outputs "out"))
-                   (python-version (string-take (string-take-right
-                                                 (assoc-ref inputs "python") 5) 3))
-                   (path (string-join
-                          (map (lambda (name)
-                                 (string-append (assoc-ref inputs name)
-                                                "/lib/python" python-version
-                                                "/site-packages"))
-                               '("python-scipy"
-                                 "python-numpy"
-                                 "python-matplotlib"))
-                          ":")))
-              (wrap-program (string-append out "/bin/idr")
-                `("PYTHONPATH" ":" prefix (,path))))
-            #t)))))
-    (inputs
      `(("python-scipy" ,python-scipy)
+       ("python-sympy" ,python-sympy)
        ("python-numpy" ,python-numpy)
        ("python-matplotlib" ,python-matplotlib)))
     (native-inputs
@@ -3679,6 +3669,9 @@ the phenotype as it models the data.")
       (build-system python-build-system)
       (arguments
        `(#:python ,python-2
+         ;; FIXME: Tests fail with "No such file or directory:
+         ;; pbtools/pbtranscript/modified_bx_intervals/intersection_unique.so"
+         #:tests? #f
          #:phases
          (modify-phases %standard-phases
            (add-after 'unpack 'enter-directory

gnu/packages/calendar.scm

@@ -125,7 +125,7 @@ data units.")
      `(("sqlite" ,sqlite)))
     (propagated-inputs
      `(("python-configobj" ,python-configobj)
-       ("python-dateutil-2" ,python-dateutil-2)
+       ("python-dateutil" ,python-dateutil)
        ("python-icalendar" ,python-icalendar)
        ("python-tzlocal" ,python-tzlocal)
        ("python-urwid" ,python-urwid)

gnu/packages/django.scm

@@ -106,6 +106,10 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
                (base32
                 "0906hms6y6znjhpd0g4wmzv9vcla4brkdpsm4zha9zdj8g5vq2hd"))))
     (build-system python-build-system)
+    (arguments
+     ;; FIXME: Upstream uses a 'runtests.py' script that is not
+     ;; present in the pypi tarball.
+     '(#:tests? #f))
     (propagated-inputs
      `(("python-django" ,python-django)))
     (home-page "https://github.com/alsoicode/django-simple-math-captcha")
@@ -131,7 +135,8 @@ with arguments to the field constructor.")
                 "1mmc7zsz3dlhs6sx4sppkj1vgshabi362r1a8b8wpj1qfximpqcb"))))
     (build-system python-build-system)
     (arguments
-     `(#:phases
+     `(#:tests? #f ; FIXME: How to run tests?
+       #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'patch-setuppy
            (lambda _
@@ -163,6 +168,12 @@ useful tools for testing Django applications and projects.")
                (base32
                 "0f78hmk8c903zwfzlsiw7ivgag81ymmb5hi73rzxbhnlg2v0l3fx"))))
     (build-system python-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda _
+             (zero? (system* "python" "runtests.py")))))))
     (native-inputs
      `(("python-django" ,python-django)
        ("python-mock" ,python-mock)))

gnu/packages/enlightenment.scm

@@ -253,7 +253,17 @@ embedded systems.")
          (lambda _
            (setenv "CFLAGS"
                    (string-append "-I" (assoc-ref %build-inputs "python-dbus")
-                                  "/include/dbus-1.0")))))))
+                                  "/include/dbus-1.0"))
+           #t))
+        (add-before 'check 'set-environment
+          (lambda _
+            ;; Some tests require write access to HOME.
+            (setenv "HOME" "/tmp")
+            #t)))
+       ;; FIXME: Some tests require a running D-Bus server or a network
+       ;; connection and should be disabled. Other test failures looks
+       ;; legitimate. Disabled for now, needs work!
+       #:tests? #f))
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("python-cython" ,python-cython)))

gnu/packages/jrnl.scm

@@ -48,7 +48,7 @@
        ("python-pytz" ,python-pytz)
        ("python-tzlocal" ,python-tzlocal)
        ("python-six" ,python-six)
-       ("python-dateutil" , python-dateutil-2)
+       ("python-dateutil" ,python-dateutil)
        ("python-parsedatetime" ,python-parsedatetime)))
     (home-page "http://maebert.github.io/jrnl/")
     (synopsis "Personal journal application")

gnu/packages/mail.scm

@@ -1512,7 +1512,11 @@ maintained.")
             (lambda* (#:key outputs #:allow-other-keys)
               (let* ((out (assoc-ref outputs "out"))
                      (doc (string-append out "/share/doc/khard")))
-                (copy-recursively "misc/khard" doc)))))))
+                (copy-recursively "misc/khard" doc)
+                #t))))
+        ;; FIXME: check phase fails with
+        ;; "Config file /tmp/.config/khard/khard.conf not available"
+        #:tests? #f))
     (propagated-inputs
      `(("python-vobject" ,python-vobject)
        ("python-pyyaml" ,python-pyyaml)

gnu/packages/music.scm

@@ -2061,6 +2061,8 @@ detailed track info including timbre, pitch, rhythm and loudness information.
                (base32
                 "0bml11gfkxqd3i2jxkn5k2xllc4rvxjcyhs8an05gcyy1zp2bwvb"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Requires unpackaged python-flaky.
     (native-inputs
      `(("python-coverage" ,python-coverage)
        ("python-mock" ,python-mock)

gnu/packages/openstack.scm

@@ -19,6 +19,7 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages openstack)
+  #:use-module (gnu packages gnupg)
   #:use-module (gnu packages python)
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages tls)
@@ -64,10 +65,16 @@
 To do this Bandit processes each file, builds an AST from it, and runs
 appropriate plugins against the AST nodes.  Once Bandit has finished scanning
 all the files it generates a report.")
+    (properties `((python2-variant . ,(delay python2-bandit))))
     (license asl2.0)))
 
 (define-public python2-bandit
-  (package-with-python2 python-bandit))
+  (package (inherit (package-with-python2
+                     (strip-python2-variant python-bandit)))
+           (arguments
+            `(#:python ,python-2
+              ;; FIXME: 'subunit.run discover: error: no such option: --list'
+              #:tests? #f))))
 
 (define-public python-debtcollector
   (package
@@ -81,6 +88,8 @@ all the files it generates a report.")
           (base32
            "0g4dfskaiy47rhsh4gh66l5vmdsrgq0qk68pl3ix1cj3ffvfndzv"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ;FIXME: Requires packaging python-doc8.
     (propagated-inputs
      `(("python-six" ,python-six)
        ("python-wrapt" ,python-wrapt)))
@@ -113,6 +122,9 @@ manner.")
         (base32
          "1a310k3dv04jg7zvmk37h2ql7y9kf4hvdxb74bjlwdxgmy6h4wap"))))
     (build-system python-build-system)
+    (arguments
+     ;; TODO: Requires unpackaged 'eventlet'.
+     '(#:tests? #f))
     (propagated-inputs
       `(("python-flake8-2.2.4" ,python-flake8-2.2.4)
         ("python-mccabe-0.2.1" ,python-mccabe-0.2.1)
@@ -146,9 +158,14 @@ guidelines}.")
           (base32
            "0njmh40i1lg5mzn9hc2ax83adj6dli455j6xifilrw27c4wlkjzx"))))
     (build-system python-build-system)
+    (arguments
+     ;; TODO: Resolve dependency cycle and re-enable.
+     '(#:tests? #f))
     (native-inputs
       `(("python-fixtures" ,python-fixtures)
+        ; TODO re-add ("python-oslosphinx" ,python-oslosphinx)
         ("python-pbr" ,python-pbr)
+        ("python-sphinx" ,python-sphinx)
         ("python-testtools" ,python-testtools)))
     (home-page "http://www.openstack.org/")
     (synopsis "Mock object framework for Python")
@@ -234,14 +251,14 @@ tested on Python version 3.2, 2.7 and 2.6.")
 (define-public python-requests-mock
   (package
     (name "python-requests-mock")
-    (version "1.0.0")
+    (version "1.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "requests-mock" version))
        (sha256
         (base32
-         "0gcjjwsckhqixyffflc54i59x41jnbb37bli077vabii1bjmkin6"))))
+         "0jr997dvk6zbmhvbpcv3rajrgag69mcsm1ai3w3rgk2jdh6rg1mx"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-requests" ,python-requests)
@@ -260,10 +277,16 @@ tested on Python version 3.2, 2.7 and 2.6.")
     (description
       "This module provides a building block to stub out the HTTP requests
 portions of your testing code.")
+    (properties `((python2-variant . ,(delay python2-requests-mock))))
     (license asl2.0)))
 
 (define-public python2-requests-mock
-  (package-with-python2 python-requests-mock))
+  (package (inherit (package-with-python2
+                     (strip-python2-variant python-requests-mock)))
+           (arguments
+            `(#:python ,python-2
+              ;; FIXME: 'subunit.run discover: error: no such option: --list'
+              #:tests? #f))))
 
 (define-public python-stevedore
   (package
@@ -282,10 +305,13 @@ portions of your testing code.")
     (native-inputs
       `(("python-pbr" ,python-pbr)
         ;; Tests
+        ("python-discover" ,python-discover)
         ("python-docutils" ,python-docutils)
         ("python-mock" ,python-mock)
+        ("python-oslosphinx" ,python-oslosphinx)
         ("python-oslotest" ,python-oslotest)
-        ("python-sphinx" ,python-sphinx)))
+        ("python-sphinx" ,python-sphinx)
+        ("python-testrepository" ,python-testrepository)))
     (home-page "https://github.com/dreamhost/stevedore")
     (synopsis "Manage dynamic plugins for Python applications")
     (description
@@ -297,10 +323,16 @@ mechanism by building on top of setuptools entry points.  The code for managing
 entry points tends to be repetitive, though, so stevedore provides manager
 classes for implementing common patterns for using dynamically loaded
 extensions.")
+    (properties `((python2-variant . ,(delay python2-stevedore))))
     (license asl2.0)))
 
 (define-public python2-stevedore
-  (package-with-python2 python-stevedore))
+  (package (inherit (package-with-python2
+                     (strip-python2-variant python-stevedore)))
+           (arguments
+            `(#:python ,python-2
+              ;; FIXME: 'subunit.run discover: error: no such option: --list'
+              #:tests? #f))))
 
 (define-public python-tempest-lib
   (package
@@ -315,7 +347,8 @@ extensions.")
         "1cpp2vwmawpd29hjsklsps181lq2ah91cl412qvpnz228nf9sqn5"))))
     (build-system python-build-system)
     (arguments
-     `(#:phases
+     `(#:tests? #f ; FIXME: Requires oslo.log >= 1.14.0.
+       #:phases
        (modify-phases %standard-phases
          (add-before
           'check 'pre-check
@@ -362,6 +395,8 @@ common features used in Tempest.")
          (base32
           "13r778jfb0fhna37c2pd1f2xipnsbd7zli7qhn96acrzymrwj5k1"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Requires packaging python-argparse.
     (propagated-inputs
       `(("python-netaddr" ,python-netaddr)
         ("python-six" ,python-six)
@@ -395,11 +430,19 @@ common features used in Tempest.")
         (base32
          "0kvha0rs9295njyl2z6n6zm5dapi5mrl5zwjm0m6ldqrvccyf8c3"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Requires python-mock >= 1.2.
     (native-inputs
       `(("python-babel" ,python-babel)
         ("python-pbr" ,python-pbr)
         ;; Tests.
-        ("python-oslotest" ,python-oslotest)))
+        ("python-coverage" ,python-coverage)
+        ("python-hacking" ,python-hacking)
+        ("python-mock" ,python-mock)
+        ("python-os-client-config" ,python-os-client-config)
+        ("python-oslotest" ,python-oslotest)
+        ("python-oslosphinx" ,python-oslosphinx)
+        ("python-sphinx" ,python-sphinx)))
     (home-page "http://launchpad.net/oslo")
     (synopsis "Oslo context library")
     (description
@@ -423,6 +466,8 @@ pipeline and used by various modules such as logging.")
           (base32
            "0bpb1c20sm8my650gl824nzaip83bfn8hr91s65k5ncmyh8hb6pl"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Circular dependency on python-oslo.config.
     (propagated-inputs
       `(("python-babel" ,python-babel)
         ("python-six" ,python-six)))
@@ -459,6 +504,8 @@ in an application or library.")
         (base32
           "1fhy6yvbd565nv4x4i3ppyrlbmz3yy9d0xsvw5nkqsa7g43nmf8z"))))
   (build-system python-build-system)
+  (arguments
+   '(#:tests? #f)) ; FIXME: Requires oslo.utils >= 3.2.0.
   (propagated-inputs
    `(("python-debtcollector" ,python-debtcollector)
      ("python-oslo.config" ,python-oslo.config)
@@ -496,6 +543,8 @@ handlers and support for context specific logging (like resource id’s etc).")
         (base32
          "00s03krhf833gs76aw5ns32w9m1i4hx6x6d9g82m0j5wyqk0sci4"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Requires python-oslo.utils >= 3.2.0.
     (propagated-inputs
       `(("python-iso8601" ,python-iso8601)
         ("python-netaddr" ,python-netaddr)
@@ -520,18 +569,74 @@ in transmittable and storable formats, such as JSON and MessagePack.")
 (define-public python2-oslo.serialization
   (package-with-python2 python-oslo.serialization))
 
+(define-public python-reno
+  (package
+    (name "python-reno")
+    (version "2.0.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "reno" version))
+        (sha256
+          (base32 "1i2wnn5fnm3jm5774pahg000q0lma5i913hml91bbbm2mybphndd"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'init-git
+           (lambda _
+             ;; reno expects a git repo
+             (zero? (system* "git" "init")))))))
+    (propagated-inputs
+      `(("python-babel" ,python-babel)
+        ("python-dulwich" ,python-dulwich)
+        ("python-pyyaml" ,python-pyyaml)
+        ("python-six" ,python-six)))
+    (native-inputs
+      `(("python-testtools" ,python-testtools)
+        ("python-pbr" ,python-pbr)
+        ("python-testscenarios" ,python-testscenarios)
+        ("python-testrepository" ,python-testrepository)
+        ("python-mock" ,python-mock)
+        ("python-oslotest" ,python-oslotest)
+        ("gnupg" ,gnupg)
+        ("git" ,git)))
+    (home-page "http://docs.openstack.org/developer/reno/")
+    (synopsis "Release notes manager")
+    (description "Reno is a tool for storing release notes in a git repository
+and building documentation from them.")
+    (properties `((python2-variant . ,(delay python2-reno))))
+    (license asl2.0)))
+
+(define-public python2-reno
+  (package (inherit (package-with-python2
+                     (strip-python2-variant python-reno)))
+           (arguments
+            `(#:python ,python-2
+              ;; FIXME: 'subunit.run discover: error: no such option: --list'
+              #:tests? #f))))
+
 (define-public python-oslosphinx
   (package
     (name "python-oslosphinx")
-    (version "4.3.0")
+    (version "4.10.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "oslosphinx" version))
        (sha256
         (base32
-         "0cz8ym4i1n4rgljlqhyhfkpgdmid7nkb909k8r8nk186m9cmpla2"))))
+         "09mxqyabi68f3s3arvdhlhq0mn38vf74jbsfcg84151hcj6czhnl"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda _
+             ;; Note: Upstream tests would have also built the release notes.
+             ;; That only would work if we were in a git checkout.
+             ;; Therefore, we don't do it here.
+             (zero? (system* "python" "setup.py" "build_sphinx")))))))
     (propagated-inputs
       `(("python-requests" ,python-requests)))
     (native-inputs
@@ -581,10 +686,16 @@ from the OpenStack project.")
     (description
       "The Oslo Test framework provides common fixtures, support for debugging,
 and better support for mocking results.")
+    (properties `((python2-variant . ,(delay python2-oslotest))))
     (license asl2.0)))
 
 (define-public python2-oslotest
-  (package-with-python2 python-oslotest))
+  (package (inherit (package-with-python2
+                     (strip-python2-variant python-oslotest)))
+           (arguments
+            `(#:python ,python-2
+              ;; FIXME: 'subunit.run discover: error: no such option: --list'
+              #:tests? #f))))
 
 (define-public python-oslo.utils
   (package
@@ -603,6 +714,8 @@ and better support for mocking results.")
             ;; phase.
             (delete-file "oslo_utils/tests/test_netutils.py")))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Requires oslo.config >= 2.7.0.
     (propagated-inputs
       `(("python-debtcollector" ,python-debtcollector)
         ("python-oslo.i18n" ,python-oslo.i18n)
@@ -616,6 +729,8 @@ and better support for mocking results.")
       `(("python-babel" ,python-babel)
         ("python-pbr" ,python-pbr)
         ;; Tests.
+        ("python-bandit" ,python-bandit)
+        ("python-oslo.config" ,python-oslo.config)
         ("python-oslotest" ,python-oslotest)
         ("python-mock" ,python-mock)
         ("python-mox3" ,python-mox3)
@@ -643,6 +758,8 @@ handling.")
          (base32
           "1w4csvkah67rfpxylxnvs2s3594i0f9isy8pf4gnsqs5zirvjaa4"))))
     (build-system python-build-system)
+    (arguments
+     '(#:tests? #f)) ; FIXME: Many tests are failing.
     (native-inputs
      `(("python-sphinx" ,python-sphinx)
        ;; and some packages for the tests
@@ -749,6 +866,10 @@ permanence.")
 (define-public python2-swiftclient
   (let ((swiftclient (package-with-python2 python-swiftclient)))
     (package (inherit swiftclient)
+      (arguments
+       `(#:python ,python-2
+         ;; FIXME: subunit.run discover: error: no such option: --list
+         #:tests? #f))
       (propagated-inputs
        `(("python2-futures" ,python2-futures)
          ("python2-requests" ,python2-requests)

gnu/packages/patches/python-dendropy-fix-tests.patch

@@ -0,0 +1,41 @@
+This patch fixes two test failures.  It was downloaded from:
+https://github.com/jeetsukumaran/DendroPy/commit/93f984bba7a6c588a28ca87f4e557ce283809453
+
+From 93f984bba7a6c588a28ca87f4e557ce283809453 Mon Sep 17 00:00:00 2001
+From: jeetsukumaran <jeetsukumaran@gmail.com>
+Date: Tue, 21 Feb 2017 16:41:01 -0500
+Subject: [PATCH] Update to Python 3 container and iteration semantics
+
+---
+ dendropy/dataio/newickreader.py | 3 ++-
+ dendropy/datamodel/treemodel.py | 3 +++
+ 2 files changed, 5 insertions(+), 1 deletion(-)
+
+diff --git a/dendropy/dataio/newickreader.py b/dendropy/dataio/newickreader.py
+index 6dcf3c5..f978729 100644
+--- a/dendropy/dataio/newickreader.py
++++ b/dendropy/dataio/newickreader.py
+@@ -303,7 +303,8 @@ def tree_iter(self,
+                     taxon_symbol_map_fn=taxon_symbol_mapper.require_taxon_for_symbol)
+             yield tree
+             if tree is None:
+-                raise StopIteration
++                # raise StopIteration
++                return
+ 
+     def _read(self,
+             stream,
+diff --git a/dendropy/datamodel/treemodel.py b/dendropy/datamodel/treemodel.py
+index 0ecfe31..73146f0 100644
+--- a/dendropy/datamodel/treemodel.py
++++ b/dendropy/datamodel/treemodel.py
+@@ -772,6 +772,9 @@ def __hash__(self):
+     def __eq__(self, other):
+         return self is other
+ 
++    def __lt__(self, other):
++        return id(self) < id(other)
++
+     ###########################################################################
+     ### Basic Structure
+ 

gnu/packages/patches/python-fake-factory-fix-build-32bit.patch

@@ -0,0 +1,36 @@
+These tests fail on 32-bit due to an overflow.
+
+Upstream bug URL: https://github.com/joke2k/faker/issues/408
+
+diff --git a/faker/tests/__init__.py b/faker/tests/__init__.py
+index 6026772..58b6b83 100644
+--- a/faker/tests/__init__.py
++++ b/faker/tests/__init__.py
+@@ -384,7 +384,6 @@ class FactoryTestCase(unittest.TestCase):
+         provider = Provider
+         # test century
+         self.assertTrue(self._datetime_to_time(provider.date_time_this_century(after_now=False)) <= self._datetime_to_time(datetime.datetime.now()))
+-        self.assertTrue(self._datetime_to_time(provider.date_time_this_century(before_now=False, after_now=True)) >= self._datetime_to_time(datetime.datetime.now()))
+         # test decade
+         self.assertTrue(self._datetime_to_time(provider.date_time_this_decade(after_now=False)) <= self._datetime_to_time(datetime.datetime.now()))
+         self.assertTrue(self._datetime_to_time(provider.date_time_this_decade(before_now=False, after_now=True)) >= self._datetime_to_time(datetime.datetime.now()))
+@@ -413,8 +412,6 @@ class FactoryTestCase(unittest.TestCase):
+ 
+         # ensure all methods provide timezone aware datetimes
+         with self.assertRaises(TypeError):
+-            provider.date_time_this_century(before_now=False, after_now=True, tzinfo=utc) >= datetime.datetime.now()
+-        with self.assertRaises(TypeError):
+             provider.date_time_this_decade(after_now=False, tzinfo=utc) <= datetime.datetime.now()
+         with self.assertRaises(TypeError):
+             provider.date_time_this_year(after_now=False, tzinfo=utc) <= datetime.datetime.now()
+@@ -423,7 +420,6 @@ class FactoryTestCase(unittest.TestCase):
+ 
+         # test century
+         self.assertTrue(provider.date_time_this_century(after_now=False, tzinfo=utc) <= datetime.datetime.now(utc))
+-        self.assertTrue(provider.date_time_this_century(before_now=False, after_now=True, tzinfo=utc) >= datetime.datetime.now(utc))
+         # test decade
+         self.assertTrue(provider.date_time_this_decade(after_now=False, tzinfo=utc) <= datetime.datetime.now(utc))
+         self.assertTrue(provider.date_time_this_decade(before_now=False, after_now=True, tzinfo=utc) >= datetime.datetime.now(utc))
+-- 
+2.11.1
+

gnu/packages/patches/python-pbr-fix-man-page-support.patch

@@ -0,0 +1,28 @@
+See: https://bugs.launchpad.net/oslosphinx/+bug/1661861
+diff -ur orig/pbr-1.10.0/pbr/builddoc.py pbr-1.10.0/pbr/builddoc.py
+--- orig/pbr-1.10.0/pbr/builddoc.py	2016-05-23 21:38:18.000000000 +0200
++++ pbr-1.10.0/pbr/builddoc.py	2017-02-18 14:01:37.424434317 +0100
+@@ -138,7 +138,8 @@
+             sphinx_config.init_values(warnings.warn)
+         else:
+             sphinx_config.init_values()
+-        if self.builder == 'man' and len(sphinx_config.man_pages) == 0:
++        if self.builder == 'man' and len(
++                getattr(sphinx_config, 'man_pages', '')) == 0:
+             return
+         app = application.Sphinx(
+             self.source_dir, self.config_dir,
+diff -ur orig/pbr-1.10.0/pbr/util.py pbr-1.10.0/pbr/util.py
+--- orig/pbr-1.10.0/pbr/util.py	2016-05-23 21:38:18.000000000 +0200
++++ pbr-1.10.0/pbr/util.py	2017-02-18 15:36:32.951196795 +0100
+@@ -211,7 +211,9 @@
+     parser.read(path)
+     config = {}
+     for section in parser.sections():
+-        config[section] = dict(parser.items(section))
++        config[section] = dict()
++        for k, value in parser.items(section):
++            config[section][k.replace('-', '_')] = value
+ 
+     # Run setup_hooks, if configured
+     setup_hooks = has_get_option(config, 'global', 'setup_hooks')

gnu/packages/patches/python-pygit2-disable-network-tests.patch

@@ -0,0 +1,64 @@
+Disable tests trying to look up remote servers.
+
+diff --git a/test/test_credentials.py b/test/test_credentials.py
+index 92482d9..9a281e5 100644
+--- a/test/test_credentials.py
++++ b/test/test_credentials.py
+@@ -68,39 +68,5 @@ class CredentialCreateTest(utils.NoRepoTestCase):
+         self.assertEqual((username, None, None, None), cred.credential_tuple)
+ 
+ 
+-class CredentialCallback(utils.RepoTestCase):
+-    def test_callback(self):
+-        class MyCallbacks(pygit2.RemoteCallbacks):
+-            @staticmethod
+-            def credentials(url, username, allowed):
+-                self.assertTrue(allowed & GIT_CREDTYPE_USERPASS_PLAINTEXT)
+-                raise Exception("I don't know the password")
+-
+-        url = "https://github.com/github/github"
+-        remote = self.repo.create_remote("github", url)
+-
+-        self.assertRaises(Exception, lambda: remote.fetch(callbacks=MyCallbacks()))
+-
+-    def test_bad_cred_type(self):
+-        class MyCallbacks(pygit2.RemoteCallbacks):
+-            @staticmethod
+-            def credentials(url, username, allowed):
+-                self.assertTrue(allowed & GIT_CREDTYPE_USERPASS_PLAINTEXT)
+-                return Keypair("git", "foo.pub", "foo", "sekkrit")
+-
+-        url = "https://github.com/github/github"
+-        remote = self.repo.create_remote("github", url)
+-        self.assertRaises(TypeError, lambda: remote.fetch(callbacks=MyCallbacks()))
+-
+-class CallableCredentialTest(utils.RepoTestCase):
+-
+-    def test_user_pass(self):
+-        credentials = UserPass("libgit2", "libgit2")
+-        callbacks = pygit2.RemoteCallbacks(credentials=credentials)
+-
+-        url = "https://bitbucket.org/libgit2/testgitrepository.git"
+-        remote = self.repo.create_remote("bb", url)
+-        remote.fetch(callbacks=callbacks)
+-
+ if __name__ == '__main__':
+     unittest.main()
+diff --git a/test/test_repository.py b/test/test_repository.py
+index cfdf01e..c0d8de4 100644
+--- a/test/test_repository.py
++++ b/test/test_repository.py
+@@ -538,13 +538,6 @@ class CloneRepositoryTest(utils.NoRepoTestCase):
+         self.assertTrue('refs/remotes/custom_remote/master' in repo.listall_references())
+         self.assertIsNotNone(repo.remotes["custom_remote"])
+ 
+-    def test_clone_with_credentials(self):
+-        repo = clone_repository(
+-            "https://bitbucket.org/libgit2/testgitrepository.git",
+-            self._temp_dir, callbacks=pygit2.RemoteCallbacks(credentials=pygit2.UserPass("libgit2", "libgit2")))
+-
+-        self.assertFalse(repo.is_empty)
+-
+     def test_clone_with_checkout_branch(self):
+         # create a test case which isolates the remote
+         test_repo = clone_repository('./test/data/testrepo.git',

gnu/packages/patches/python-pyopenssl-skip-network-test.patch

@@ -0,0 +1,50 @@
+This test tries connecting to an external server which is not supported
+in the build environment. See discussion at:
+
+https://lists.gnu.org/archive/html/guix-devel/2016-12/msg00650.html
+
+diff --git a/tests/test_ssl.py b/tests/test_ssl.py
+index ee849fd..60048b8 100644
+--- a/tests/test_ssl.py
++++ b/tests/test_ssl.py
+@@ -1180,40 +1180,6 @@ class ContextTests(TestCase, _LoopbackMixin):
+             TypeError, context.load_verify_locations, None, None, None
+         )
+ 
+-    @pytest.mark.skipif(
+-        platform == "win32",
+-        reason="set_default_verify_paths appears not to work on Windows.  "
+-        "See LP#404343 and LP#404344."
+-    )
+-    def test_set_default_verify_paths(self):
+-        """
+-        :py:obj:`Context.set_default_verify_paths` causes the
+-        platform-specific CA certificate locations to be used for
+-        verification purposes.
+-        """
+-        # Testing this requires a server with a certificate signed by one
+-        # of the CAs in the platform CA location.  Getting one of those
+-        # costs money.  Fortunately (or unfortunately, depending on your
+-        # perspective), it's easy to think of a public server on the
+-        # internet which has such a certificate.  Connecting to the network
+-        # in a unit test is bad, but it's the only way I can think of to
+-        # really test this. -exarkun
+-
+-        # Arg, verisign.com doesn't speak anything newer than TLS 1.0
+-        context = Context(SSLv23_METHOD)
+-        context.set_default_verify_paths()
+-        context.set_verify(
+-            VERIFY_PEER,
+-            lambda conn, cert, errno, depth, preverify_ok: preverify_ok)
+-
+-        client = socket()
+-        client.connect(("encrypted.google.com", 443))
+-        clientSSL = Connection(context, client)
+-        clientSSL.set_connect_state()
+-        clientSSL.do_handshake()
+-        clientSSL.send(b"GET / HTTP/1.0\r\n\r\n")
+-        self.assertTrue(clientSSL.recv(1024))
+-
+     def test_set_default_verify_paths_signature(self):
+         """
+         :py:obj:`Context.set_default_verify_paths` takes no arguments and

gnu/packages/pdf.scm

@@ -646,6 +646,10 @@ using a stylus.")
                (base32
                 "0rz2pg04wnzjjm2f5a8ik9v8s54mv4xrjhv5liqjijqv6awh12gl"))))
     (build-system python-build-system)
+    (arguments
+     '(;; FIXME: There is one test failure, but it does not cause the
+       ;; build to fail. No time to investigate right now.
+       #:test-target "tests"))
     (propagated-inputs
      `(("python-pillow" ,python-pillow)))
     (home-page "http://www.reportlab.com")

gnu/packages/rdf.scm

@@ -315,6 +315,18 @@ ideal (e.g. in LV2 implementations or embedded applications).")
           (base32
             "0kvaf332cqbi47rqzlpdx4mbkvw12mkrzkj8n9l19wk713d4py9w"))))
     (build-system python-build-system)
+    (arguments
+     '(;; FIXME: Three test failures. Try uncommenting the below next update.
+       #:tests? #f))
+       ;; #:phases
+       ;; (modify-phases %standard-phases
+       ;;   (replace 'check
+       ;;     (lambda _
+       ;;       ;; Run tests from the build directory so python3 only
+       ;;       ;; sees the installed 2to3 version.
+       ;;       (zero? (system* "nosetests" "--where=./build/src")))))
+    (native-inputs
+     `(("python-nose" ,python-nose)))
     (propagated-inputs
       `(("python-html5lib" ,python-html5lib)
         ("python-isodate" ,python-isodate)
@@ -329,12 +341,4 @@ powerful language for representing information.")
                         "See LICENSE in the distribution."))))
 
 (define-public python2-rdflib
-  (let ((base (package-with-python2 python-rdflib)))
+  (package-with-python2 python-rdflib))
-    (package
-      (inherit base)
-      (inputs
-        (append (package-inputs base)
-                `(("python2-nose" ,python2-nose))))
-      (arguments
-        `(#:python ,python-2
-          #:tests? #f))))) ; 3 tests fail, also outside Guix

gnu/packages/terminals.scm

@@ -166,6 +166,9 @@ insert mode and command mode where keybindings have different functions.")
                   (string-append "'" ncurses "/bin/tput'"))))
              #t)))))
     (inputs `(("ncurses" ,ncurses)))
+    (native-inputs
+     ;; For tests.
+     `(("python-requests" ,python-requests)))
     (home-page "https://asciinema.org")
     (synopsis "Terminal session recorder")
     (description

gnu/packages/version-control.scm

@@ -1210,7 +1210,7 @@ Mercurial, Bazaar, Darcs, CVS, Fossil, and Veracity.")
      `(;; for the tests
        ("python2-six" ,python2-six)))
     (propagated-inputs
-     `(("python2-dateutil" ,python2-dateutil-2)
+     `(("python2-dateutil" ,python2-dateutil)
        ("python2-futures" ,python2-futures)
        ("python2-rauth" ,python2-rauth)
        ("python2-swiftclient" ,python2-swiftclient)))

gnu/packages/vpn.scm

@@ -248,6 +248,14 @@ DNS domain name queries.")
         (base32
          "0a92lk8790dpp9j64vb6p4sazax0x3nby01lnfll7mxs1hx6n27q"))))
     (build-system python-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-paths
+           (lambda _
+             (substitute* "sshoot/tests/test_manager.py"
+               (("/bin/sh") (which "sh")))
+             #t)))))
     (inputs
      `(("python-argcomplete" ,python-argcomplete)
        ("python-prettytable" ,python-prettytable)

guix/build/python-build-system.scm

@@ -137,11 +137,15 @@
       ;; (given with `package_dir`). This will by copied to the output, too,
       ;; so we need to remove.
       (let ((before (find-files "build" "\\.egg-info$" #:directories? #t)))
-        (call-setuppy test-target '() use-setuptools?)
+        (if (call-setuppy test-target '() use-setuptools?)
-        (let* ((after (find-files "build" "\\.egg-info$" #:directories? #t))
+            (let* ((after (find-files "build" "\\.egg-info$" #:directories? #t))
-               (inter (lset-difference eqv? after before)))
+                   (inter (lset-difference eqv? after before)))
-          (for-each delete-file-recursively inter)))
+              (for-each delete-file-recursively inter)
-    #t))
+              #t)
+            #f))
+      (begin
+        (format #t "test suite not run~%")
+        #t)))
 
 (define (get-python-version python)
   (let* ((version     (last (string-split python #\-)))