gnu: Add r-chipexoqual.

* gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
master
Ricardo Wurmus 2018-11-27 23:23:20 +01:00
parent 4236959de8
commit 41ffc214e4
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1 changed files with 38 additions and 0 deletions

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@ -1030,3 +1030,41 @@ maps.")
"This package provides tools to parse Illumina Sequence Analysis
Viewer (SAV) files, access data, and generate QC plots.")
(license license:agpl3+)))
(define-public r-chipexoqual
(package
(name "r-chipexoqual")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ChIPexoQual" version))
(sha256
(base32
"1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"))))
(properties `((upstream-name . "ChIPexoQual")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-biovizbase" ,r-biovizbase)
("r-broom" ,r-broom)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-hexbin" ,r-hexbin)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rmarkdown" ,r-rmarkdown)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-viridis" ,r-viridis)))
(home-page "https://github.com/keleslab/ChIPexoQual")
(synopsis "Quality control pipeline for ChIP-exo/nexus data")
(description
"This package provides a quality control pipeline for ChIP-exo/nexus
sequencing data.")
(license license:gpl2+)))