gnu: Add r-chipexoqual.
* gnu/packages/bioconductor.scm (r-chipexoqual): New variable.
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@ -1030,3 +1030,41 @@ maps.")
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"This package provides tools to parse Illumina Sequence Analysis
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"This package provides tools to parse Illumina Sequence Analysis
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Viewer (SAV) files, access data, and generate QC plots.")
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Viewer (SAV) files, access data, and generate QC plots.")
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(license license:agpl3+)))
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(license license:agpl3+)))
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(define-public r-chipexoqual
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(package
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(name "r-chipexoqual")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ChIPexoQual" version))
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(sha256
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(base32
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"1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"))))
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(properties `((upstream-name . "ChIPexoQual")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocparallel" ,r-biocparallel)
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("r-biovizbase" ,r-biovizbase)
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("r-broom" ,r-broom)
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("r-data-table" ,r-data-table)
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("r-dplyr" ,r-dplyr)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-hexbin" ,r-hexbin)
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("r-iranges" ,r-iranges)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rmarkdown" ,r-rmarkdown)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-viridis" ,r-viridis)))
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(home-page "https://github.com/keleslab/ChIPexoQual")
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(synopsis "Quality control pipeline for ChIP-exo/nexus data")
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(description
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"This package provides a quality control pipeline for ChIP-exo/nexus
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sequencing data.")
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(license license:gpl2+)))
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