gnu: Add r-homo-sapiens.

* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
This commit is contained in:
Ricardo Wurmus 2017-11-07 15:47:46 +01:00
parent b52a866d14
commit 421c68e3f7
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 32 additions and 0 deletions

View File

@ -9881,6 +9881,38 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.")
on mapping using Entrez Gene identifiers.") on mapping using Entrez Gene identifiers.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")
(version "1.3.1")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"Homo.sapiens_"
version ".tar.gz"))
(sha256
(base32
"151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"))))
(properties
`((upstream-name . "Homo.sapiens")))
(build-system r-build-system)
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)
("r-go-db" ,r-go-db)
("r-org-hs-eg-db" ,r-org-hs-eg-db)
("r-txdb-hsapiens-ucsc-hg19-knowngene" ,r-txdb-hsapiens-ucsc-hg19-knowngene)
("r-organismdbi" ,r-organismdbi)
("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://bioconductor.org/packages/Homo.sapiens/")
(synopsis "Annotation package for the Homo.sapiens object")
(description
"This package contains the Homo.sapiens object to access data from
several related annotation packages.")
(license license:artistic2.0)))
(define-public r-qvalue (define-public r-qvalue
(package (package
(name "r-qvalue") (name "r-qvalue")