gnu: Add r-gviz.
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
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@ -10034,6 +10034,52 @@ interpretation of members of a collection of association statistics on a
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family of feature/genome hypotheses.")
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family of feature/genome hypotheses.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-gviz
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(package
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(name "r-gviz")
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(version "1.22.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Gviz" version))
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(sha256
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(base32
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"1lrw65a8426wpxw975wjcaiacpp6fqa00nif1yxigyankbfs23c8"))))
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(properties `((upstream-name . "Gviz")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biomart" ,r-biomart)
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("r-biostrings" ,r-biostrings)
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("r-biovizbase" ,r-biovizbase)
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("r-bsgenome" ,r-bsgenome)
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("r-digest" ,r-digest)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-latticeextra" ,r-latticeextra)
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("r-matrixstats" ,r-matrixstats)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/Gviz")
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(synopsis "Plotting data and annotation information along genomic coordinates")
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(description
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"Genomic data analyses requires integrated visualization of known genomic
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information and new experimental data. Gviz uses the biomaRt and the
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rtracklayer packages to perform live annotation queries to Ensembl and UCSC
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and translates this to e.g. gene/transcript structures in viewports of the
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grid graphics package. This results in genomic information plotted together
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with your data.")
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(license license:artistic2.0)))
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(define-public r-qvalue
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(define-public r-qvalue
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(package
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(package
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(name "r-qvalue")
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(name "r-qvalue")
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