gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New variable.
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@ -5019,6 +5019,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.")
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provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-mmusculus-ucsc-mm10
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(package
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(name "r-bsgenome-mmusculus-ucsc-mm10")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "http://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Mmusculus.UCSC.mm10_"
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version ".tar.gz"))
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(sha256
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(base32
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"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
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(properties
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`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
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(synopsis "Full genome sequences for Mouse")
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(description
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"This package provides full genome sequences for Mus
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musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
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in Biostrings objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-celegans-ucsc-ce6
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(package
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(name "r-bsgenome-celegans-ucsc-ce6")
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