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gnu: r-scater: Update to 1.10.0. 

* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.0.
[propagated-inputs]: Add r-biocparallel; remove r-biobase, r-data-table,
r-edger, r-limma, r-rhdf5, r-rjson, r-shiny, r-shinydashboard, and r-tximport.
master
Ricardo Wurmus 2018-11-07 12:19:04 +01:00
parent f93ec63ccf
commit 48f2791496
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1 changed files with 3 additions and 11 deletions
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gnu/packages/bioinformatics.scm
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@ -10959,39 +10959,31 @@ libraries.")
(define-public r-scater
(package
(name "r-scater")
(version "1.8.4")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "scater" version))
(sha256
(base32
"173lfpas2fqsp4xxsw01wkxd4496c5p8himw9b4r9z4npxkfyv16"))))
"1kwa9n70c5j0xcj6nkmlkzjr63cnj78mp8nhg58n07fq1ijm4ns3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-beachmat" ,r-beachmat)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-data-table" ,r-data-table)
("r-biocparallel" ,r-biocparallel)
("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dplyr" ,r-dplyr)
("r-edger" ,r-edger)
("r-ggbeeswarm" ,r-ggbeeswarm)
("r-ggplot2" ,r-ggplot2)
("r-limma" ,r-limma)
("r-matrix" ,r-matrix)
("r-plyr" ,r-plyr)
("r-rcpp" ,r-rcpp)
("r-reshape2" ,r-reshape2)
("r-rhdf5" ,r-rhdf5)
("r-rhdf5lib" ,r-rhdf5lib)
("r-rjson" ,r-rjson)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-shinydashboard" ,r-shinydashboard)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-tximport" ,r-tximport)
("r-viridis" ,r-viridis)))
(home-page "https://github.com/davismcc/scater")
(synopsis "Single-cell analysis toolkit for gene expression data in R")