gnu: Add r-rqc.
* gnu/packages/bioconductor.scm (r-rqc): New variable.
This commit is contained in:
parent
5e0241db84
commit
496b024fde
|
@ -4507,3 +4507,44 @@ short genomic reads. It covers a complete workflow starting from raw sequence
|
||||||
reads, over creation of alignments and quality control plots, to the
|
reads, over creation of alignments and quality control plots, to the
|
||||||
quantification of genomic regions of interest.")
|
quantification of genomic regions of interest.")
|
||||||
(license license:gpl2)))
|
(license license:gpl2)))
|
||||||
|
|
||||||
|
(define-public r-rqc
|
||||||
|
(package
|
||||||
|
(name "r-rqc")
|
||||||
|
(version "1.18.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "Rqc" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g"))))
|
||||||
|
(properties `((upstream-name . "Rqc")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-biocparallel" ,r-biocparallel)
|
||||||
|
("r-biocstyle" ,r-biocstyle)
|
||||||
|
("r-biostrings" ,r-biostrings)
|
||||||
|
("r-biovizbase" ,r-biovizbase)
|
||||||
|
("r-genomicalignments" ,r-genomicalignments)
|
||||||
|
("r-genomicfiles" ,r-genomicfiles)
|
||||||
|
("r-ggplot2" ,r-ggplot2)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-knitr" ,r-knitr)
|
||||||
|
("r-markdown" ,r-markdown)
|
||||||
|
("r-plyr" ,r-plyr)
|
||||||
|
("r-rcpp" ,r-rcpp)
|
||||||
|
("r-reshape2" ,r-reshape2)
|
||||||
|
("r-rsamtools" ,r-rsamtools)
|
||||||
|
("r-s4vectors" ,r-s4vectors)
|
||||||
|
("r-shiny" ,r-shiny)
|
||||||
|
("r-shortread" ,r-shortread)))
|
||||||
|
(home-page "https://github.com/labbcb/Rqc")
|
||||||
|
(synopsis "Quality control tool for high-throughput sequencing data")
|
||||||
|
(description
|
||||||
|
"Rqc is an optimized tool designed for quality control and assessment of
|
||||||
|
high-throughput sequencing data. It performs parallel processing of entire
|
||||||
|
files and produces a report which contains a set of high-resolution
|
||||||
|
graphics.")
|
||||||
|
(license license:gpl2+)))
|
||||||
|
|
Loading…
Reference in New Issue