gnu: Add r-rqc.

* gnu/packages/bioconductor.scm (r-rqc): New variable.
master
Ricardo Wurmus 2019-05-10 13:26:05 +02:00
parent 5e0241db84
commit 496b024fde
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@ -4507,3 +4507,44 @@ short genomic reads. It covers a complete workflow starting from raw sequence
reads, over creation of alignments and quality control plots, to the reads, over creation of alignments and quality control plots, to the
quantification of genomic regions of interest.") quantification of genomic regions of interest.")
(license license:gpl2))) (license license:gpl2)))
(define-public r-rqc
(package
(name "r-rqc")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rqc" version))
(sha256
(base32
"09kyn5nc2fqfdm3q07h0x2jyh24vsq5sxxm63ir1lvv250lmal4g"))))
(properties `((upstream-name . "Rqc")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biocstyle" ,r-biocstyle)
("r-biostrings" ,r-biostrings)
("r-biovizbase" ,r-biovizbase)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfiles" ,r-genomicfiles)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-knitr" ,r-knitr)
("r-markdown" ,r-markdown)
("r-plyr" ,r-plyr)
("r-rcpp" ,r-rcpp)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-shiny" ,r-shiny)
("r-shortread" ,r-shortread)))
(home-page "https://github.com/labbcb/Rqc")
(synopsis "Quality control tool for high-throughput sequencing data")
(description
"Rqc is an optimized tool designed for quality control and assessment of
high-throughput sequencing data. It performs parallel processing of entire
files and produces a report which contains a set of high-resolution
graphics.")
(license license:gpl2+)))