gnu: Add r-annotationhub.

* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
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Ricardo Wurmus 2017-08-14 17:48:58 +02:00
parent 5f96f30f5d
commit 4a007ffafe
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@ -9255,6 +9255,40 @@ global-scaling and full-quantile normalization.")
Shiny-based display methods for Bioconductor objects.") Shiny-based display methods for Bioconductor objects.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-annotationhub
(package
(name "r-annotationhub")
(version "2.8.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHub" version))
(sha256
(base32
"1nh5si3j1nv37jcg4260582ayjg18851np47cskrm54prnvhwd9r"))))
(properties `((upstream-name . "AnnotationHub")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocgenerics" ,r-biocgenerics)
("r-biocinstaller" ,r-biocinstaller)
("r-httr" ,r-httr)
("r-interactivedisplaybase" ,r-interactivedisplaybase)
("r-rsqlite" ,r-rsqlite)
("r-s4vectors" ,r-s4vectors)
("r-yaml" ,r-yaml)))
(home-page "http://bioconductor.org/packages/AnnotationHub")
(synopsis "Client to access AnnotationHub resources")
(description
"This package provides a client for the Bioconductor AnnotationHub web
resource. The AnnotationHub web resource provides a central location where
genomic files (e.g. VCF, bed, wig) and other resources from standard
locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
metadata about each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of files retrieved
by the user, helping with quick and reproducible access.")
(license license:artistic2.0)))
(define htslib-for-sambamba (define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package (package