gnu: Add r-mzid.
* gnu/packages/bioinformatics.scm (r-mzid): New variable.
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@ -8363,3 +8363,33 @@ analogous to \"normalized log-ratios\". However, in contrast to the latter,
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their variance is independent of the mean, and they are usually more sensitive
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their variance is independent of the mean, and they are usually more sensitive
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and specific in detecting differential transcription.")
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and specific in detecting differential transcription.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-mzid
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(package
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(name "r-mzid")
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(version "1.12.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "mzID" version))
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(sha256
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(base32
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"1zn896cpfvqp1qmq5c4vcj933hb8rxwb6gkck1wqvr7393rpqy1q"))))
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(properties `((upstream-name . "mzID")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-iterators" ,r-iterators)
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("r-plyr" ,r-plyr)
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("r-protgenerics" ,r-protgenerics)
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("r-rcpp" ,r-rcpp)
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("r-xml" ,r-xml)))
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(home-page "http://bioconductor.org/packages/mzID")
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(synopsis "Parser for mzIdentML files")
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(description
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"This package provides a parser for mzIdentML files implemented using the
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XML package. The parser tries to be general and able to handle all types of
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mzIdentML files with the drawback of having less pretty output than a vendor
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specific parser.")
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(license license:gpl2+)))
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