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Merge branch 'master' into core-updates.

This commit is contained in:
Andreas Enge 2015-04-26 20:08:49 +02:00
parent d074e2f991 7bde30e18d
commit 4ac0d6444d
38 changed files with 758 additions and 177 deletions
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6
build-aux/hydra/gnu-system.scm
View File

@ -210,6 +210,10 @@ valid."
#f)))))
(define %hydra-supported-systems
;; This is the list of system types for which build slaves are available.
'("x86_64-linux" "i686-linux" "mips64el-linux"))
;;;
;;; Hydra entry point.
;;;
@ -269,4 +273,4 @@ valid."
(cross-jobs system)))
(else
(error "unknown subset" subset))))
%supported-systems))
%hydra-supported-systems))

3
gnu-system.am
View File

@ -422,6 +422,7 @@ dist_patch_DATA = \
gnu/packages/patches/gcc-cross-environment-variables.patch \
gnu/packages/patches/geoclue-config.patch \
gnu/packages/patches/ghostscript-runpath.patch \
gnu/packages/patches/gitolite-openssh-6.8-compat.patch \
gnu/packages/patches/glib-tests-desktop.patch \
gnu/packages/patches/glib-tests-homedir.patch \
gnu/packages/patches/glib-tests-prlimit.patch \
@ -515,6 +516,7 @@ dist_patch_DATA = \
gnu/packages/patches/procps-make-3.82.patch \
gnu/packages/patches/pulseaudio-fix-mult-test.patch \
gnu/packages/patches/pulseaudio-longer-test-timeout.patch \
gnu/packages/patches/pycairo-wscript.patch \
gnu/packages/patches/pybugz-encode-error.patch \
gnu/packages/patches/pybugz-stty.patch \
gnu/packages/patches/pyqt-configure.patch \
@ -555,6 +557,7 @@ dist_patch_DATA = \
gnu/packages/patches/weex-vacopy.patch \
gnu/packages/patches/wicd-urwid-1.3.patch \
gnu/packages/patches/wmctrl-64-fix.patch \
gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch \
gnu/packages/patches/xf86-video-ark-remove-mibstore.patch \
gnu/packages/patches/xf86-video-ast-remove-mibstore.patch \
gnu/packages/patches/xf86-video-geode-glibc-2.20.patch \

4
gnu/packages/admin.scm
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@ -702,7 +702,9 @@ commands and their arguments.")
".tar.gz"))
(sha256
(base32
"0skvkl6c10ls4s48b2wmf47h9j1y40nlzxnzn8hyaw2j0prmpapa"))))
"0skvkl6c10ls4s48b2wmf47h9j1y40nlzxnzn8hyaw2j0prmpapa"))
(patches
(list (search-patch "wpa-supplicant-CVE-2015-1863.patch")))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-replace

81
gnu/packages/audio.scm
View File

@ -236,6 +236,48 @@ bass section with five drawbars. A standalone JACK application and LV2
plugins are provided.")
(license license:gpl2)))
(define-public calf
(package
(name "calf")
(version "0.0.60")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://sourceforge/calf/calf/"
version "/calf-" version ".tar.gz"))
(sha256
(base32
"019fwg00jv217a5r767z7szh7vdrarybac0pr2sk26xp81kibrx9"))))
(build-system gnu-build-system)
(inputs
`(("fluidsynth" ,fluidsynth)
("expat" ,expat)
("glib" ,glib)
("gtk" ,gtk+-2)
("cairo" ,cairo)
("lash" ,lash)
("jack" ,jack-1)
("lv2" ,lv2)
("ladspa" ,ladspa)
("fftw" ,fftw)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(native-search-paths
(list (search-path-specification
(variable "LV2_PATH")
(files '("lib/lv2")))))
(home-page "http://calf.sourceforge.net/")
(synopsis "Audio plug-in pack for LV2 and JACK environments")
(description
"Calf Studio Gear is an audio plug-in pack for LV2 and JACK environments.
The suite contains lots of effects (delay, modulation, signal processing,
filters, equalizers, dynamics, distortion and mastering effects),
instruments (SF2 player, organ simulator and a monophonic synthesizer) and
tools (analyzer, mono/stereo tools, crossovers).")
;; calfjackhost is released under GPLv2+
;; The plugins are released under LGPLv2.1+
(license (list license:lgpl2.1+ license:gpl2+))))
(define-public csound
(package
(name "csound")
@ -314,6 +356,45 @@ language and software synthesizer.")
ALSA PCM devices.")
(license license:gpl2+)))
(define-public fluidsynth
(package
(name "fluidsynth")
(version "1.1.6")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://sourceforge/fluidsynth/fluidsynth-"
version "/fluidsynth-" version ".tar.gz"))
(sha256
(base32
"070pwb7brdcn1mfvplkd56vjc7lbz4iznzkqvfsakvgbv68k71ah"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(alist-cons-after
'unpack
'remove-broken-symlinks
(lambda _ (delete-file-recursively "m4") #t)
%standard-phases)))
(inputs
`(("libsndfile" ,libsndfile)
("alsa-lib" ,alsa-lib)
("jack" ,jack-1)
("ladspa" ,ladspa)
("lash" ,lash)
("readline" ,readline)
("glib" ,glib)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "http://www.fluidsynth.org/")
(synopsis "SoundFont synthesizer")
(description
"FluidSynth is a real-time software synthesizer based on the SoundFont 2
specifications. FluidSynth reads and handles MIDI events from the MIDI input
device. It is the software analogue of a MIDI synthesizer. FluidSynth can
also play midifiles using a Soundfont.")
(license license:gpl2+)))
(define-public faad2
(package
(name "faad2")

109
gnu/packages/bioinformatics.scm
View File

@ -28,6 +28,7 @@
#:use-module (guix build-system trivial)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages file)
#:use-module (gnu packages java)
@ -37,6 +38,7 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
#:use-module (gnu packages swig)
@ -46,6 +48,29 @@
#:use-module (gnu packages xml)
#:use-module (gnu packages zip))
(define-public bamtools
(package
(name "bamtools")
(version "2.3.0")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/pezmaster31/bamtools/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018"))))
(build-system cmake-build-system)
(arguments `(#:tests? #f)) ;no "check" target
(inputs `(("zlib" ,zlib)))
(home-page "https://github.com/pezmaster31/bamtools")
(synopsis "C++ API and command-line toolkit for working with BAM data")
(description
"BamTools provides both a C++ API and a command-line toolkit for handling
BAM files.")
(license license:expat)))
(define-public bedops
(package
(name "bedops")
@ -507,6 +532,51 @@ file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
other types of unwanted sequence from high-throughput sequencing reads.")
(license license:expat)))
(define-public express
(package
(name "express")
(version "1.5.1")
(source (origin
(method url-fetch)
(uri
(string-append
"http://bio.math.berkeley.edu/eXpress/downloads/express-"
version "/express-" version "-src.tgz"))
(sha256
(base32
"03rczxd0gjp2l1jxcmjfmf5j94j77zqyxa6x063zsc585nj40n0c"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;no "check" target
#:phases
(alist-cons-after
'unpack 'use-shared-boost-libs-and-set-bamtools-paths
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "CMakeLists.txt"
(("set\\(Boost_USE_STATIC_LIBS ON\\)")
"set(Boost_USE_STATIC_LIBS OFF)")
(("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/bamtools/include")
(string-append (assoc-ref inputs "bamtools") "/include/bamtools")))
(substitute* "src/CMakeLists.txt"
(("\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/\\.\\./bamtools/lib")
(string-append (assoc-ref inputs "bamtools") "/lib/bamtools")))
#t)
%standard-phases)))
(inputs
`(("boost" ,boost)
("bamtools" ,bamtools)
("protobuf" ,protobuf)
("zlib" ,zlib)))
(home-page "http://bio.math.berkeley.edu/eXpress")
(synopsis "Streaming quantification for high-throughput genomic sequencing")
(description
"eXpress is a streaming tool for quantifying the abundances of a set of
target sequences from sampled subsequences. Example applications include
transcript-level RNA-Seq quantification, allele-specific/haplotype expression
analysis (from RNA-Seq), transcription factor binding quantification in
ChIP-Seq, and analysis of metagenomic data.")
(license license:artistic2.0)))
(define-public fastx-toolkit
(package
(name "fastx-toolkit")
@ -1386,6 +1456,45 @@ sequences.")
;; STAR is licensed under GPLv3 or later; htslib is MIT-licensed.
(license license:gpl3+)))
(define-public subread
(package
(name "subread")
(version "1.4.6-p2")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://sourceforge/subread/subread-"
version "-source.tar.gz"))
(sha256
(base32
"06sv9mpcsdj6p68y15d6gi70lca3lxmzk0dn61hg0kfsa7rxmsr3"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no "check" target
#:make-flags '("-f" "Makefile.Linux")
#:phases
(alist-cons-after
'unpack 'enter-dir
(lambda _ (chdir "src") #t)
(alist-replace
'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
(mkdir-p bin)
(copy-recursively "../bin" bin)))
;; no "configure" script
(alist-delete 'configure %standard-phases)))))
(inputs `(("zlib" ,zlib)))
(home-page "http://bioinf.wehi.edu.au/subread-package/")
(synopsis "Tool kit for processing next-gen sequencing data")
(description
"The subread package contains the following tools: subread aligner, a
general-purpose read aligner; subjunc aligner: detecting exon-exon junctions
and mapping RNA-seq reads; featureCounts: counting mapped reads for genomic
features; exactSNP: a SNP caller that discovers SNPs by testing signals
against local background noises.")
(license license:gpl3+)))
(define-public shogun
(package
(name "shogun")

22
gnu/packages/boost.scm
View File

@ -102,3 +102,25 @@
across a broad spectrum of applications.")
(license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt"
"Some components have other similar licences."))))
(define-public mdds
(package
(name "mdds")
(version "0.12.0")
(source (origin
(method url-fetch)
(uri (string-append
"http://kohei.us/files/mdds/src/mdds_" version ".tar.bz2"))
(sha256
(base32
"10ar7r0gkdl2r7916jlkl5c38cynrh7x9s90a5i8d242r8ixw8ia"))))
(build-system gnu-build-system)
(propagated-inputs
`(("boost" ,boost))) ; inclusion of header files
(home-page "https://code.google.com/p/multidimalgorithm/")
(synopsis "Multi-dimensional C++ data structures and indexing algorithms")
(description "Mdds (multi-dimensional data structure) provides a
collection of multi-dimensional data structures and indexing algorithms
for C++. It includes flat segment trees, segment trees, rectangle sets,
point quad trees, multi-type vectors and multi-type matrices.")
(license license:expat)))

5
gnu/packages/commencement.scm
View File

@ -2,7 +2,7 @@
;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -794,4 +794,7 @@ and binaries, plus debugging symbols in the 'debug' output), and Binutils.")
(define-public gcc-toolchain-4.9
(gcc-toolchain gcc-4.9))
(define-public gcc-toolchain-5.1
(gcc-toolchain gcc-5.1))
;;; commencement.scm ends here

4
gnu/packages/cups.scm
View File

@ -36,7 +36,7 @@
(define-public cups-filters
(package
(name "cups-filters")
(version "1.0.61")
(version "1.0.68")
(source (origin
(method url-fetch)
(uri
@ -44,7 +44,7 @@
"cups-filters-" version ".tar.xz"))
(sha256
(base32
"1bq48nnrarlbf6qc93bz1n5wlh6j420gppbck3r45sinwhz5wa7m"))
"0dx4assqzqdi0q4j7z5s7xzzvzxnd5c1njd9139a1h353qrcr5fi"))
(modules '((guix build utils)))
(snippet
;; install backends, banners and filters to cups-filters output

6
gnu/packages/databases.scm
View File

@ -228,14 +228,14 @@ as a drop-in replacement of MySQL.")
(define-public postgresql
(package
(name "postgresql")
(version "9.3.5")
(version "9.3.6")
(source (origin
(method url-fetch)
(uri (string-append "http://ftp.postgresql.org/pub/source/v"
version "/postgresql-" version ".tar.gz"))
version "/postgresql-" version ".tar.bz2"))
(sha256
(base32
"08kga00izykgvnx7hn995wc4zjqslspapaa8z63045p1ya14mr4g"))))
"056ass7nnfyv7blv02anv795kgpz77gipdpxggd835cdwrhwns13"))))
(build-system gnu-build-system)
(inputs
`(("readline" ,readline)

9
gnu/packages/enlightenment.scm
View File

@ -156,15 +156,16 @@ full capabilities of EFL.")
(define-public evas-generic-loaders
(package
(name "evas-generic-loaders")
(version "1.13.0")
(version "1.13.2")
(source (origin
(method url-fetch)
(uri
(string-append
"http://download.enlightenment.org/rel/libs/evas_generic_loaders/evas_generic_loaders-"
version ".tar.gz"))
"https://download.enlightenment.org/rel/libs/"
"evas_generic_loaders/evas_generic_loaders-"
version ".tar.xz"))
(sha256
(base32 "16yzjk58bxsd0rlnpzrr8as9fxjjiq01swzhpadsgkmq33abgg63"))))
(base32 "1z5vjabs3psvqs3251mpyl1wgbdv1grn30yf682vamdqc5ckfa69"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))

4
gnu/packages/freedesktop.scm
View File

@ -53,14 +53,14 @@ freedesktop.org project.")
(define-public libinput
(package
(name "libinput")
(version "0.13.0")
(version "0.14.1")
(source (origin
(method url-fetch)
(uri (string-append "http://freedesktop.org/software/libinput/"
name "-" version ".tar.xz"))
(sha256
(base32
"06n6ih2bfr957rprsgjxhi6f7m96wmf4kgac8y0ispsjvrzszv3c"))))
"0r0v5jqbnwgndq6ns3ss3kv1438ny302m7bg1najcl1dpqp21v9b"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))

12
gnu/packages/gcc.scm
View File

@ -327,6 +327,18 @@ Go. It also includes runtime support libraries for these languages.")
"1pbjp4blk2ycaa6r3jmw4ky5f1s9ji3klbqgv8zs2sl5jn1cj810"))
(patches (list (search-patch "gcc-arm-link-spec-fix.patch")))))))
(define-public gcc-5.1
(package (inherit gcc-4.7)
(version "5.1.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/gcc/gcc-"
version "/gcc-" version ".tar.bz2"))
(sha256
(base32
"1bd5vj4px3s8nlakbgrh38ynxq4s654m6nxz7lrj03mvkkwgvnmp"))
(patches (list (search-patch "gcc-arm-link-spec-fix.patch")))))))
(define* (custom-gcc gcc name languages #:key (separate-lib-output? #t))
"Return a custom version of GCC that supports LANGUAGES."
(package (inherit gcc)

50
gnu/packages/glib.scm
View File

@ -207,14 +207,14 @@ dynamic loading, and an object system.")
(define gobject-introspection
(package
(name "gobject-introspection")
(version "1.42.0")
(version "1.44.0")
(source (origin
(method url-fetch)
(uri (string-append "http://ftp.gnome.org/pub/GNOME/sources/"
(uri (string-append "mirror://gnome/sources/"
"gobject-introspection/" (version-major+minor version)
"/gobject-introspection-" version ".tar.xz"))
(sha256
(base32 "1xwm7wmr9r9wp6xljb3bckx3a4siybavaq39w46ly7gpskxfv8iv"))
(base32 "1b972qg2yb51sdavfvb6kc19akwc15c1bwnbg81vadxamql2q33g"))
(patches (list
(search-patch "gobject-introspection-cc.patch")
(search-patch
@ -243,14 +243,7 @@ dynamic loading, and an object system.")
(arguments
`(;; The patch 'gobject-introspection-absolute-shlib-path.patch' causes
;; some tests to fail.
#:tests? #f
#:phases
(alist-cons-before
'configure 'patch-paths
(lambda _
(substitute* "giscanner/sourcescanner.py"
(("GUIX_GCC_PATH") (which "gcc"))))
%standard-phases)))
#:tests? #f))
(home-page "https://wiki.gnome.org/GObjectIntrospection")
(synopsis "Generate interface introspection data for GObject libraries")
(description
@ -313,14 +306,14 @@ The intltool collection can be used to do these things:
(define itstool
(package
(name "itstool")
(version "1.2.0")
(version "2.0.2")
(source (origin
(method url-fetch)
(uri (string-append "http://files.itstool.org/itstool/itstool-"
version ".tar.bz2"))
(sha256
(base32
"1akq75aflihm3y7js8biy7b5mw2g11vl8yq90gydnwlwp0zxdzj6"))))
"0fh34wi52i0qikgvlmrcpf1vx6gc1xqdad4539l4d9hikfsrz45z"))))
(build-system gnu-build-system)
(propagated-inputs
`(("libxml2" ,libxml2)
@ -350,7 +343,7 @@ translated.")
(define dbus-glib
(package
(name "dbus-glib")
(version "0.102")
(version "0.104")
(source (origin
(method url-fetch)
(uri
@ -358,7 +351,7 @@ translated.")
version ".tar.gz"))
(sha256
(base32
"177j5p2vrvpmzk2xrrj6akn73kvpbvnmsjvlmca9l55qbdcfsr39"))))
"1xi1v1msz75qs0s4lkyf1psrksdppa3hwkg0mznc6gpw5flg3hdz"))))
(build-system gnu-build-system)
(inputs
`(("dbus" ,dbus)
@ -377,14 +370,15 @@ by GDBus included in Glib.")
(define libsigc++
(package
(name "libsigc++")
(version "2.3.1")
(version "2.4.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/libsigc++/2.3/libsigc++-"
version ".tar.xz"))
(uri (string-append "mirror://gnome/sources/libsigc++/"
(version-major+minor version) "/"
name "-" version ".tar.xz"))
(sha256
(base32
"14q3sq6d43f6wfcmwhw4v1aal4ba0h5x9v6wkxy2dnqznd95il37"))))
"1v0rvkzglzmf67y9nkcppwjwi68j1cy5yhldvcq7xrv8594l612l"))))
(build-system gnu-build-system)
(native-inputs `(("pkg-config" ,pkg-config)
("m4" ,m4)))
@ -403,7 +397,7 @@ has an ease of use unmatched by other C++ callback libraries.")
(define glibmm
(package
(name "glibmm")
(version "2.42.0")
(version "2.44.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/glibmm/"
@ -411,7 +405,7 @@ has an ease of use unmatched by other C++ callback libraries.")
"/glibmm-" version ".tar.xz"))
(sha256
(base32
"15rk3az8jh3rdwlc3lxjljbnh60drj3ka9574zd39lkqfgcq6l4q"))))
"1a1fczy7hcpn24fglyn4i79f4yjc8s50is70q03mb294bm1c02hv"))))
(build-system gnu-build-system)
(arguments
`(#:phases (alist-cons-before
@ -485,8 +479,7 @@ useful for C++.")
(define-public python-pygobject
(package
(name "python-pygobject")
(version "3.12.2") ;last version that works with
;gobject-introspection 1.38
(version "3.16.1")
(source
(origin
(method url-fetch)
@ -495,8 +488,7 @@ useful for C++.")
"/pygobject-" version ".tar.xz"))
(sha256
(base32
"08m5yad1hjdax4g39w6lgjk4124mcwpa8fc5iyvb8nygk8s3syky"))))
;; 3.14.0: 0m1d75iwxa6k1xbkn6c6yq5r10pxnf7i5c2a5yvwsnab7ylzz7kp
"1hqyma73w0lnjcgx68kawhnq84aq92xlkdqphrlc2ppia38dm5kx"))))
(build-system gnu-build-system)
(native-inputs
`(("which" ,which)
@ -549,14 +541,6 @@ useful for C++.")
(base32
"1symyzbjmxvksn2ifdkk50lafjm2llf2sbmky062gq2pz3cg23cy"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-cons-before
'build 'set-cc
(lambda _
;; Set $CC so that g-ir-scanner works.
(setenv "CC" "gcc")
#t)
%standard-phases)))
(native-inputs
`(("glib" ,glib "bin") ; uses glib-mkenums
("pkg-config" ,pkg-config)

61
gnu/packages/gnome.scm
View File

@ -499,13 +499,6 @@ some form of information without getting in the user's way.")
("glib:bin" ,glib "bin")
("gobject-introspection" ,gobject-introspection)
("intltool" ,intltool)))
(arguments
`(#:phases
(alist-cons-before
'build 'pre-build
(lambda* _
(setenv "CC" "gcc"))
%standard-phases)))
(home-page "https://wiki.gnome.org/Libpeas")
(synopsis "GObject plugin system")
(description
@ -675,11 +668,7 @@ dealing with different structured file formats.")
(string-join (find-files (assoc-ref inputs "gdk-pixbuf")
"libpixbufloader-.*\\.so") " ")
"> " loaders-directory ".cache")))))
(alist-cons-before
'build 'pre-build
(lambda* _
(setenv "CC" "gcc"))
%standard-phases)))))
%standard-phases))))
(native-inputs
`(("pkg-config" ,pkg-config)
("glib" ,glib "bin") ; glib-mkenums, etc.
@ -1385,7 +1374,7 @@ engineering.")
(define-public vala
(package
(name "vala")
(version "0.26.1")
(version "0.28.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -1393,9 +1382,15 @@ engineering.")
name "-" version ".tar.xz"))
(sha256
(base32
"0swyym2papln0f62ah05dpvq3vv6fssap26jq2zqp9dkkaqsn1w4"))))
"0zwpzhkhfk3piya14m7p2hl2vaabahprphppfm46ci91z39kp7hd"))))
(build-system gnu-build-system)
(arguments '(#:make-flags '("CC=gcc")))
(arguments
'(#:phases
(modify-phases %standard-phases
(add-before 'check 'set-cc
(lambda _
(setenv "CC" "gcc")
#t)))))
(native-inputs
`(("pkg-config" ,pkg-config)
("flex" ,flex)
@ -1437,13 +1432,6 @@ libraries written in C.")
(propagated-inputs
`(("gtk+" ,gtk+) ;required by vte-2.91.pc
("gnutls" ,gnutls))) ;ditto
(arguments
`(#:phases
(alist-cons-before
'build 'pre-build
(lambda* _
(setenv "CC" "gcc"))
%standard-phases)))
(home-page "http://www.gnome.org/")
(synopsis "Virtual Terminal Emulator")
(description
@ -1542,14 +1530,6 @@ configuration storage systems.")
(base32
"02k66lpc4cmgygj66n8zcy59bggy7yzm3v4hni9xqplgva9d2yw8"))))
(build-system gnu-build-system)
(arguments
'(#:phases (alist-cons-before
'build 'set-cc
(lambda _
;; Set $CC so that g-ir-scanner works.
(setenv "CC" "gcc")
#t)
%standard-phases)))
(native-inputs
`(("glib" ,glib "bin") ;for glib-mkenums and glib-genmarshal
("gobject-introspection" ,gobject-introspection)
@ -1581,13 +1561,7 @@ JSON, such as arrays and objects.")
'(#:configure-flags
(list (string-append "--with-xkb-base="
(assoc-ref %build-inputs "xkeyboard-config")
"/share/X11/xkb"))
#:phases
(alist-cons-before
'build 'set-cc
(lambda _
(setenv "CC" "gcc")) ; for g-ir-scanner.
%standard-phases)))
"/share/X11/xkb"))))
(native-inputs
`(("glib:bin" ,glib "bin") ; for glib-mkenums, etc.
("gobject-introspection" ,gobject-introspection)
@ -1698,8 +1672,7 @@ library.")
(build-system gnu-build-system)
(outputs '("out" "doc"))
(arguments
`(#:make-flags '("CC=gcc") ; for g-ir-scanner
#:configure-flags
`(#:configure-flags
(list (string-append "--with-html-dir="
(assoc-ref %outputs "doc")
"/share/gtk-doc/html")
@ -1762,7 +1735,6 @@ and the GLib main loop, to integrate well with GNOME applications.")
(outputs '("out" "doc"))
(arguments
`(#:tests? #f ; FIXME: Testing hangs.
#:make-flags '("CC=gcc") ; for g-ir-scanner.
#:configure-flags
(list (string-append "--with-html-dir="
(assoc-ref %outputs "doc")
@ -1926,12 +1898,7 @@ keyboard shortcuts.")
(("/bin/true") (which "true")))
(substitute* "src/Makefile.in"
(("if test -w \\$\\(DESTDIR\\)\\$\\(prefix\\)/;")
"if test -w $(DESTDIR)$(localstatedir);"))))
(add-before 'build 'set-cc
(lambda _
;; Set $CC so that g-ir-scanner works.
(setenv "CC" "gcc")
#t)))))
"if test -w $(DESTDIR)$(localstatedir);")))))))
(native-inputs
`(("pkg-config" ,pkg-config)
("gobject-introspection" ,gobject-introspection)
@ -2015,7 +1982,6 @@ permission from user. ")
`(;; The tests want to write to $HOME/.cache/geocode-glib, which doesn't
;; work for the builder. Punt.
#:tests? #f
#:make-flags '("CC=gcc") ; for g-ir-scanner
))
(native-inputs
`(("glib:bin" ,glib "bin") ; for glib-mkenums
@ -2103,7 +2069,6 @@ service via the system message bus.")
`(;; The tests want to write to $HOME/.cache/geocode-glib, which doesn't
;; work for the builder. Punt.
#:tests? #f
#:make-flags '("CC=gcc") ; for g-ir-scanner
#:configure-flags
`(;; No introspection for now, as it wants to install to
;; gobject-introspection's own directory and I don't know how to easily

4
gnu/packages/gnupg.scm
View File

@ -286,7 +286,7 @@ libskba (working with X.509 certificates and CMS data).")
(define-public gpgme
(package
(name "gpgme")
(version "1.5.3")
(version "1.5.4")
(source
(origin
(method url-fetch)
@ -294,7 +294,7 @@ libskba (working with X.509 certificates and CMS data).")
".tar.bz2"))
(sha256
(base32
"1jgwmra6cf0i5x2prj92w77vl7hmj276qmmll3lwysbyn32l1c0d"))))
"0v7azxazsfakvhrxzj5ysvcxma0892c89d27c17fkj8mi3nc0f5v"))))
(build-system gnu-build-system)
(propagated-inputs
;; Needs to be propagated because gpgme.h includes gpg-error.h.

59
gnu/packages/gtk.scm
View File

@ -30,6 +30,7 @@
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module (guix build-system waf)
#:use-module (gnu packages)
#:use-module (gnu packages check)
#:use-module (gnu packages gettext)
#:use-module (gnu packages compression)
@ -352,8 +353,7 @@ in the GNOME project.")
(build-system gnu-build-system)
(outputs '("out" "doc"))
(arguments
'(#:make-flags '("CC=gcc") ; for g-ir-scanner
#:configure-flags
'(#:configure-flags
(list (string-append "--with-html-dir="
(assoc-ref %outputs "doc")
"/share/gtk-doc/html"))
@ -449,8 +449,7 @@ is part of the GNOME accessibility project.")
("pkg-config" ,pkg-config)
("python-wrapper" ,python-wrapper)))
(arguments
`(#:make-flags '("CC=gcc")
#:configure-flags
`(#:configure-flags
(list "--with-xinput=yes"
(string-append "--with-html-dir="
(assoc-ref %outputs "doc")
@ -475,7 +474,7 @@ application suites.")
(define-public gtk+
(package (inherit gtk+-2)
(name "gtk+")
(version "3.16.0")
(version "3.16.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -483,7 +482,7 @@ application suites.")
name "-" version ".tar.xz"))
(sha256
(base32
"1si6ihl1wlvag8qq3166skr9fnm9i33dimbfry1j628qzqc76qff"))))
"1yhwg2l72l3khfkprydcjlpxjrg11ccqfc80sjl56llz3jk66fd0"))))
(propagated-inputs
`(("at-spi2-atk" ,at-spi2-atk)
("atk" ,atk)
@ -625,7 +624,7 @@ library.")
(define-public pangomm
(package
(name "pangomm")
(version "2.34.0")
(version "2.36.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -633,7 +632,7 @@ library.")
name "-" version ".tar.xz"))
(sha256
(base32
"0hcyvv7c5zmivprdam6cp111i6hn2y5jsxzk00m6j9pncbzvp0hf"))))
"1w11d05nkxglzg67rfa81vqghm75xhy6j396xmmp5mq8qx96knd8"))))
(build-system gnu-build-system)
(native-inputs `(("pkg-config" ,pkg-config)))
(propagated-inputs
@ -674,7 +673,7 @@ toolkit.")
(define-public gtkmm
(package
(name "gtkmm")
(version "3.14.0")
(version "3.16.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -682,7 +681,7 @@ toolkit.")
name "-" version ".tar.xz"))
(sha256
(base32
"12z4g2in82nk92nfjs2hmrdcwbav8v3laz1813x2dhkf5jk2ixfr"))))
"036xn22jkaf3akpid7w23b8vkqa3xxqz93mwacmyar5vw7slm3cv"))))
(build-system gnu-build-system)
(native-inputs `(("pkg-config" ,pkg-config)))
(propagated-inputs
@ -706,7 +705,7 @@ extensive documentation, including API reference and a tutorial.")
(define-public gtkmm-2
(package (inherit gtkmm)
(name "gtkmm")
(version "2.24.2")
(version "2.24.4")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -714,7 +713,7 @@ extensive documentation, including API reference and a tutorial.")
name "-" version ".tar.xz"))
(sha256
(base32
"0gcm91sc1a05c56kzh74l370ggj0zz8nmmjvjaaxgmhdq8lpl369"))))
"1vpmjqv0aqb1ds0xi6nigxnhlr0c74090xzi15b92amlzkrjyfj4"))))
(propagated-inputs
`(("pangomm" ,pangomm)
("cairomm" ,cairomm)
@ -733,29 +732,23 @@ extensive documentation, including API reference and a tutorial.")
version ".tar.bz2"))
(sha256
(base32
"1gjkf8x6hyx1skq3hhwcbvwifxvrf9qxis5vx8x5igmmgs70g94s"))))
(build-system python-build-system)
"1gjkf8x6hyx1skq3hhwcbvwifxvrf9qxis5vx8x5igmmgs70g94s"))
(patches (list (search-patch "pycairo-wscript.patch")))))
(build-system waf-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
`(("pkg-config" ,pkg-config)
("python-waf" ,python-waf)))
(propagated-inputs ;pycairo.pc references cairo
`(("cairo" ,cairo)))
(arguments
`(#:tests? #f
#:phases (alist-cons-before
'build 'configure
(lambda* (#:key outputs #:allow-other-keys)
(zero? (system* "./waf" "configure"
(string-append "--prefix="
(assoc-ref outputs "out")))))
(alist-replace
'build
(lambda _
(zero? (system* "./waf" "build")))
(alist-replace
'install
(lambda _
(zero? (system* "./waf" "install")))
%standard-phases)))))
#:phases
(modify-phases %standard-phases
(add-before
'configure 'patch-waf
(lambda* (#:key inputs #:allow-other-keys)
;; The bundled `waf' doesn't work with python-3.4.x.
(copy-file (assoc-ref %build-inputs "python-waf") "./waf"))))))
(home-page "http://cairographics.org/pycairo/")
(synopsis "Python bindings for cairo")
(description
@ -776,7 +769,11 @@ extensive documentation, including API reference and a tutorial.")
"0cblk919wh6w0pgb45zf48xwxykfif16qk264yga7h9fdkq3j16k"))))
(arguments
`(#:python ,python-2
,@(package-arguments python-pycairo)))
,@(substitute-keyword-arguments (package-arguments python-pycairo)
((#:phases phases)
`(alist-delete 'patch-waf ,phases))
((#:native-inputs native-inputs)
`(alist-delete "python-waf" ,native-inputs)))))
;; Dual-licensed under LGPL 2.1 or Mozilla Public License 1.1
(license (list license:lgpl2.1 license:mpl1.1))))

83
gnu/packages/java.scm
View File

@ -32,6 +32,7 @@
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gl)
#:use-module (gnu packages gnuzilla) ;nss
#:use-module (gnu packages ghostscript) ;lcms
#:use-module (gnu packages gnome)
@ -47,6 +48,88 @@
#:use-module (gnu packages zip)
#:use-module (gnu packages texinfo))
(define-public swt
(package
(name "swt")
(version "4.4.2")
(source (origin
(method url-fetch)
(uri (string-append
"http://ftp-stud.fht-esslingen.de/pub/Mirrors/"
"eclipse/eclipse/downloads/drops4/R-" version
"-201502041700/swt-" version "-gtk-linux-x86.zip"))
(sha256
(base32
"0lzyqr8k2zm5s8fmnrx5kxpslxfs0i73y26fwfms483x45izzwj8"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags '("-f" "make_linux.mak")
#:tests? #f ; no "check" target
#:phases
(alist-replace
'unpack
(lambda _
(and (mkdir "swt")
(zero? (system* "unzip" (assoc-ref %build-inputs "source") "-d" "swt"))
(chdir "swt")
(mkdir "src")
(zero? (system* "unzip" "src.zip" "-d" "src"))
(chdir "src")))
(alist-replace
'build
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((lib (string-append (assoc-ref outputs "out") "/lib")))
(setenv "JAVA_HOME" (assoc-ref inputs "icedtea6"))
;; Build shared libraries. Users of SWT have to set the system
;; property swt.library.path to the "lib" directory of this
;; package output.
(mkdir-p lib)
(setenv "OUTPUT_DIR" lib)
(zero? (system* "bash" "build.sh"))
;; build jar
(mkdir "build")
(for-each (lambda (file)
(format #t "Compiling ~s\n" file)
(system* "javac" "-d" "build" file))
(find-files "." "\\.java"))
(zero? (system* "jar" "cvf" "swt.jar" "-C" "build" "."))))
(alist-cons-after
'install 'install-java-files
(lambda* (#:key outputs #:allow-other-keys)
(let ((java (string-append (assoc-ref outputs "out")
"/share/java")))
(mkdir-p java)
(copy-file "swt.jar" (string-append java "/swt.jar"))) #t)
(alist-delete 'configure %standard-phases))))))
(inputs
`(("xulrunner" ,icecat)
("gtk" ,gtk+-2)
("libxtst" ,libxtst)
("libxt" ,libxt)
("mesa" ,mesa)
("glu" ,glu)))
(native-inputs
`(("pkg-config" ,pkg-config)
("unzip" ,unzip)
("icedtea6" ,icedtea6 "jdk")))
(home-page "https://www.eclipse.org/swt/")
(synopsis "Widget toolkit for Java")
(description
"SWT is a widget toolkit for Java designed to provide efficient, portable
access to the user-interface facilities of the operating systems on which it
is implemented.")
;; SWT code is licensed under EPL1.0
;; Gnome and Gtk+ bindings contain code licensed under LGPLv2.1
;; Cairo bindings contain code under MPL1.1
;; XULRunner 1.9 bindings contain code under MPL2.0
(license (list
license:epl1.0
license:mpl1.1
license:mpl2.0
license:lgpl2.1+))))
(define-public ant
(package
(name "ant")

5
gnu/packages/julia.scm
View File

@ -118,7 +118,10 @@
,(match (or (%current-target-system)
(%current-system))
("x86_64-linux" "MARCH=x86-64")
("i686-linux" "MARCH=pentium4"))
("i686-linux" "MARCH=pentium4")
;; Prevent errors when querying this package on unsupported
;; platforms, e.g. when running "guix package --search="
(_ "MARCH=UNSUPPORTED"))
"CONFIG_SHELL=bash" ;needed to build bundled libraries
"USE_SYSTEM_LIBUV=0" ;Julia expects a modified libuv

4
gnu/packages/libidn.scm
View File

@ -26,13 +26,13 @@
(define-public libidn
(package
(name "libidn")
(version "1.29")
(version "1.30")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/libidn/libidn-" version
".tar.gz"))
(sha256 (base32
"0z3w5arlvyiyvzg76msg3n2px3c1glqr6wnj7rq6zczrpdyp90pv"))))
"0lxh5r1z8gsk4jxx3rv8aasjv8p53j4y04kvfn2w30a0syagrf9r"))))
(build-system gnu-build-system)
;; FIXME: No Java and C# libraries are currently built.
(synopsis "Internationalized string processing library")

16
gnu/packages/lisp.scm
View File

@ -343,9 +343,13 @@ statistical profiler, a code coverage tool, and many other extensions.")
(chdir (string-append
"lisp-kernel/"
,(match (or (%current-target-system) (%current-system))
("i686-linux" "linuxx8632")
("i686-linux" "linuxx8632")
("x86_64-linux" "linuxx8664")
("armhf-linux" "linuxarm"))))
("armhf-linux" "linuxarm")
;; Prevent errors when querying this package
;; on unsupported platforms, e.g. when running
;; "guix package --search="
(_ "UNSUPPORTED"))))
(substitute* '("Makefile")
(("/bin/rm") "rm"))
(setenv "CC" "gcc")
@ -366,9 +370,13 @@ statistical profiler, a code coverage tool, and many other extensions.")
(bash (assoc-ref inputs "bash"))
(kernel
,(match (or (%current-target-system) (%current-system))
("i686-linux" "lx86cl")
("i686-linux" "lx86cl")
("x86_64-linux" "lx86cl64")
("armhf-linux" "armcl")))
("armhf-linux" "armcl")
;; Prevent errors when querying this package
;; on unsupported platforms, e.g. when running
;; "guix package --search="
(_ "UNSUPPORTED")))
(heap (string-append kernel ".image")))
(mkdir-p libdir)
(mkdir-p bindir)

17
gnu/packages/mail.scm
View File

@ -28,6 +28,7 @@
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages backup)
#:use-module (gnu packages bash)
#:use-module (gnu packages curl)
#:use-module (gnu packages cyrus-sasl)
#:use-module (gnu packages databases)
@ -361,27 +362,37 @@ attachments, create new maildirs, and so on.")
(define-public notmuch
(package
(name "notmuch")
(version "0.18.1")
(version "0.19")
(source (origin
(method url-fetch)
(uri (string-append "http://notmuchmail.org/releases/notmuch-"
version ".tar.gz"))
(sha256
(base32
"1pdp9l7yv71d3fjb30qyccva8h03hvg88q4a00yi50v2j70kvmgj"))))
"1szf6c44g209pcjq5nvfhlp3nzcm3lrcwv4spsxmwy13hiaccvrr"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ;; FIXME: Test suite hangs and times out.
#:phases (alist-replace
'configure
(lambda* (#:key outputs #:allow-other-keys)
(setenv "CC" "gcc")
(setenv "CONFIG_SHELL" (which "sh"))
;; XXX Should python-docutils make a symlink
;; for "rst2man" and other similar programs?
(substitute* '("configure" "doc/prerst2man.py")
((" rst2man ") " rst2man.py "))
(let ((out (assoc-ref outputs "out")))
(zero? (system* "./configure"
(string-append "--prefix=" out)))))
%standard-phases)))
(native-inputs
`(("pkg-config" ,pkg-config)))
`(("pkg-config" ,pkg-config)
("python" ,python-2)
("python2-docutils" ,python2-docutils)
("bash-completion" ,bash-completion)))
(inputs
`(("emacs" ,emacs)
("glib" ,glib)

53
gnu/packages/music.scm
View File

@ -29,6 +29,7 @@
#:use-module (gnu packages flex)
#:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gettext)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages gnome)
@ -36,6 +37,7 @@
#:use-module (gnu packages guile)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages java)
#:use-module (gnu packages linux) ; for alsa-utils
#:use-module (gnu packages man)
#:use-module (gnu packages mp3)
@ -221,3 +223,54 @@ features a statistics overview so you can monitor your progress across several
sessions. Solfege is also designed to be extensible so you can easily write
your own lessons.")
(license license:gpl3+)))
(define-public tuxguitar
(package
(name "tuxguitar")
(version "1.2")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://sourceforge/tuxguitar/TuxGuitar/TuxGuitar-"
version "/tuxguitar-src-" version ".tar.gz"))
(sha256
(base32
"1g1yf2gd06fzdhqb8kb8dmdcmr602s9y24f01kyl4940wimgr944"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags (list (string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out") "/lib")
(string-append "PREFIX="
(assoc-ref %outputs "out"))
(string-append "SWT_PATH="
(assoc-ref %build-inputs "swt")
"/share/java/swt.jar"))
#:tests? #f ;no "check" target
#:parallel-build? #f ;not supported
#:phases
(alist-cons-before
'build 'enter-dir-set-path-and-pass-ldflags
(lambda* (#:key inputs #:allow-other-keys)
(chdir "TuxGuitar")
(substitute* "GNUmakefile"
(("PROPERTIES\\?=")
(string-append "PROPERTIES?= -Dswt.library.path="
(assoc-ref inputs "swt") "/lib"))
(("\\$\\(GCJ\\) -o") "$(GCJ) $(LDFLAGS) -o"))
#t)
(alist-delete 'configure %standard-phases))))
(inputs
`(("swt" ,swt)))
(native-inputs
`(("gcj" ,gcj-4.8)
("pkg-config" ,pkg-config)))
(home-page "http://tuxguitar.com.ar")
(synopsis "Multitrack tablature editor and player")
(description
"TuxGuitar is a guitar tablature editor with player support through midi.
It can display scores and multitrack tabs. TuxGuitar provides various
additional features, including autoscrolling while playing, note duration
management, bend/slide/vibrato/hammer-on/pull-off effects, support for
tuplets, time signature management, tempo management, gp3/gp4/gp5 import and
export.")
(license license:lgpl2.1+)))

4
gnu/packages/ocr.scm
View File

@ -29,14 +29,14 @@
(define-public ocrad
(package
(name "ocrad")
(version "0.24")
(version "0.25")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/ocrad/ocrad-"
version ".tar.lz"))
(sha256
(base32
"0hhlx072d00bi9qia0nj5izsq4qkscpfz2mpbyfc72msl3hfvslv"))))
"1m2dblgvvjs48rsglfdwq0ib9zk8h9n34xsh67ibrg0g0ffbw477"))))
(build-system gnu-build-system)
(native-inputs `(("lzip" ,lzip)))
(home-page "http://www.gnu.org/software/ocrad/")

7
gnu/packages/package-management.scm
View File

@ -67,6 +67,9 @@
`(#:configure-flags (list
"--localstatedir=/var"
"--sysconfdir=/etc"
(string-append "--with-bash-completion-dir="
(assoc-ref %outputs "out")
"/etc/bash_completion.d")
(string-append "--with-libgcrypt-prefix="
(assoc-ref %build-inputs
"libgcrypt")))
@ -145,7 +148,7 @@ the Nix package manager.")
;;
;; Note: use a short commit id; when using the long one, the limit on socket
;; file names is exceeded while running the tests.
(let ((commit "0b13161"))
(let ((commit "fc34dee"))
(package (inherit guix-0.8.1)
(version (string-append "0.8.1." commit))
(source (origin
@ -155,7 +158,7 @@ the Nix package manager.")
(commit commit)))
(sha256
(base32
"0h9yyfxs14di858hb9ypjvdjryv8nzll6f9vxkggcy40iyhp65sh"))))
"0nx60wwiar0s4bgwrm3nrskc54jig3vw7yzwxkwilc43cnlgpkja"))))
(arguments
(substitute-keyword-arguments (package-arguments guix-0.8.1)
((#:phases phases)

25
gnu/packages/patches/gitolite-openssh-6.8-compat.patch Normal file
View File

@ -0,0 +1,25 @@
From ed807a40c6683960e357bc995b3acf721ec088b4 Mon Sep 17 00:00:00 2001
From: Sitaram Chamarty <sitaram@atc.tcs.com>
Date: Thu, 19 Mar 2015 05:17:59 +0530
Subject: [PATCH] openssh 6.8 compat
---
src/triggers/post-compile/ssh-authkeys | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/triggers/post-compile/ssh-authkeys b/src/triggers/post-compile/ssh-authkeys
index 84dda73..d5f5d8b 100755
--- a/src/triggers/post-compile/ssh-authkeys
+++ b/src/triggers/post-compile/ssh-authkeys
@@ -115,7 +115,7 @@ sub fp_file {
my $f = shift;
my $fp = `ssh-keygen -l -f '$f'`;
chomp($fp);
- _die "fingerprinting failed for '$f'" unless $fp =~ /([0-9a-f][0-9a-f](:[0-9a-f][0-9a-f])+)/;
+ _die "fingerprinting failed for '$f'" unless $fp =~ /([0-9a-f][0-9a-f](:[0-9a-f][0-9a-f])+)/ or $fp =~ m(SHA256:([A-ZA-z0-9+/]+));
$fp = $1;
return $fp;
}
--
2.2.1

25
gnu/packages/patches/gobject-introspection-cc.patch
View File

@ -1,14 +1,11 @@
--- a/giscanner/sourcescanner.py 2013-12-15 23:03:54.002937000 +0100
+++ b/giscanner/sourcescanner.py 2013-12-15 23:04:50.322937000 +0100
@@ -277,6 +277,11 @@
defines = ['__GI_SCANNER__']
undefs = []
cpp_args = os.environ.get('CC', 'cc').split() # support CC="ccache gcc"
+ if (cpp_args == ['cc'] and
+ not any(map(lambda x: os.access(os.path.join(x, 'cc'), os.X_OK),
+ os.environ.get('PATH').split(':')))):
+ cpp_args = ['GUIX_GCC_PATH']
+
if 'cl' in cpp_args:
# The Microsoft compiler/preprocessor (cl) does not accept
# source input from stdin (the '-' flag), so we need
Use gcc as the default C compiler if CC is not set.
--- gobject-introspection-1.44.0.orig/giscanner/__init__.py 2014-08-04 22:37:07.000000000 +0800
+++ gobject-introspection-1.44.0/giscanner/__init__.py 2015-04-20 17:30:26.507697234 +0800
@@ -22,3 +22,5 @@
builddir = os.environ.get('UNINSTALLED_INTROSPECTION_BUILDDIR')
if builddir is not None:
__path__.append(os.path.join(builddir, 'giscanner'))
+if not 'CC' in os.environ:
+ os.environ['CC'] = 'gcc'

31
gnu/packages/patches/pycairo-wscript.patch Normal file
View File

@ -0,0 +1,31 @@
Update the wscript to work with waf-1.8.8. Based on:
http://cgit.freedesktop.org/pycairo/commit/?id=c57cd129407c904f8c2f752a59d0183df7b01a5e
--- pycairo-1.10.0.orig/wscript 2011-04-18 15:42:29.000000000 +0800
+++ pycairo-1.10.0/wscript 2015-04-20 13:01:45.383756898 +0800
@@ -13,18 +13,18 @@
def options(ctx):
print(' %s/options()' %d)
- ctx.tool_options('gnu_dirs')
- ctx.tool_options('compiler_cc')
- ctx.tool_options('python') # options for disabling pyc or pyo compilation
+ ctx.load('gnu_dirs')
+ ctx.load('compiler_c')
+ ctx.load('python') # options for disabling pyc or pyo compilation
def configure(ctx):
print(' %s/configure()' %d)
env = ctx.env
- ctx.check_tool('gnu_dirs')
- ctx.check_tool('compiler_cc')
- ctx.check_tool('python')
+ ctx.load('gnu_dirs')
+ ctx.load('compiler_c')
+ ctx.load('python')
ctx.check_python_version((3,1,0))
ctx.check_python_headers()
ctx.check_cfg(package='cairo', atleast_version=cairo_version_required,

42
gnu/packages/patches/wpa-supplicant-CVE-2015-1863.patch Normal file
View File

@ -0,0 +1,42 @@
From 9ed4eee345f85e3025c33c6e20aa25696e341ccd Mon Sep 17 00:00:00 2001
From: Jouni Malinen <jouni@qca.qualcomm.com>
Date: Tue, 7 Apr 2015 11:32:11 +0300
Subject: [PATCH] P2P: Validate SSID element length before copying it
(CVE-2015-1863)
This fixes a possible memcpy overflow for P2P dev->oper_ssid in
p2p_add_device(). The length provided by the peer device (0..255 bytes)
was used without proper bounds checking and that could have resulted in
arbitrary data of up to 223 bytes being written beyond the end of the
dev->oper_ssid[] array (of which about 150 bytes would be beyond the
heap allocation) when processing a corrupted management frame for P2P
peer discovery purposes.
This could result in corrupted state in heap, unexpected program
behavior due to corrupted P2P peer device information, denial of service
due to process crash, exposure of memory contents during GO Negotiation,
and potentially arbitrary code execution.
Thanks to Google security team for reporting this issue and smart
hardware research group of Alibaba security team for discovering it.
Signed-off-by: Jouni Malinen <jouni@qca.qualcomm.com>
---
src/p2p/p2p.c | 1 +
1 file changed, 1 insertion(+)
diff --git a/src/p2p/p2p.c b/src/p2p/p2p.c
index f584fae..a45fe73 100644
--- a/src/p2p/p2p.c
+++ b/src/p2p/p2p.c
@@ -778,6 +778,7 @@ int p2p_add_device(struct p2p_data *p2p, const u8 *addr, int freq,
if (os_memcmp(addr, p2p_dev_addr, ETH_ALEN) != 0)
os_memcpy(dev->interface_addr, addr, ETH_ALEN);
if (msg.ssid &&
+ msg.ssid[1] <= sizeof(dev->oper_ssid) &&
(msg.ssid[1] != P2P_WILDCARD_SSID_LEN ||
os_memcmp(msg.ssid + 2, P2P_WILDCARD_SSID, P2P_WILDCARD_SSID_LEN)
!= 0)) {
--
1.9.1

4
gnu/packages/pdf.scm
View File

@ -50,13 +50,13 @@
(define-public poppler
(package
(name "poppler")
(version "0.28.1")
(version "0.32.0")
(source (origin
(method url-fetch)
(uri (string-append "http://poppler.freedesktop.org/poppler-"
version ".tar.xz"))
(sha256 (base32
"01pxjdbhvpxf00ncf8d9wxc8gkcqcxz59lwrpa151ah988inxkrc"))))
"162vfbvbz0frvqyk00ldsbl49h4bj8i8wn0ngfl30xg1lldy6qs9"))))
(build-system gnu-build-system)
;; FIXME: more dependencies could be added
;; cairo output: no (requires cairo >= 1.10.0)

36
gnu/packages/python.scm
View File

@ -3508,3 +3508,39 @@ It is written entirely in Python.")
(define-public python2-singledispatch
(package-with-python2 python-singledispatch))
(define-public python-waf
(package
(name "python-waf")
(version "1.8.8")
(source (origin
(method url-fetch)
(uri (string-append "https://waf.io/"
"waf-" version ".tar.bz2"))
(sha256
(base32
"0b5q307fgn6a5d8yjia2d1l4bk1q3ilvc0w8k4isfrrx2gbcw8wn"))))
(build-system python-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
(replace 'build
(lambda _
(zero? (begin
(system* "python" "waf-light" "configure")
(system* "python" "waf-light" "build")))))
(replace 'check
(lambda _
(zero? (system* "python" "waf" "--version"))))
(replace 'install
(lambda _
(copy-file "waf" %output))))))
(home-page "https://waf.io/")
(synopsis "Python-based build system")
(description
"Waf is a Python-based framework for configuring, compiling and installing
applications.")
(license bsd-3)))
(define-public python2-waf
(package-with-python2 python-waf))

10
gnu/packages/statistics.scm
View File

@ -42,7 +42,7 @@
(define-public r
(package
(name "r")
(version "3.1.2")
(version "3.2.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
@ -50,10 +50,14 @@
version ".tar.gz"))
(sha256
(base32
"0ypsm11c7n49pgh2ricyhhpfhas3famscdazzdp2zq70rapm1ldw"))))
"0dagyqgvi8i3nw158qi2zpwm04s4ffzvnmk5niaksvxs30zrbbpm"))))
(build-system gnu-build-system)
(arguments
`(#:phases
`(#:make-flags
(list (string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out")
"/lib/R/lib"))
#:phases
(alist-cons-before
'check 'set-timezone
;; Some tests require the timezone to be set.

60
gnu/packages/version-control.scm
View File

@ -48,6 +48,7 @@
#:use-module (gnu packages nano)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages openssl)
#:use-module (gnu packages ssh)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@ -401,6 +402,65 @@ linear. It will test every change between two points in the DAG. It will
also walk each side of a merge and test those changes individually.")
(license (x11-style "file://LICENSE")))))
(define-public gitolite
(package
(name "gitolite")
(version "3.6.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/sitaramc/gitolite/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
;; Commit ed807a4 upstream
(patches
(list (search-patch "gitolite-openssh-6.8-compat.patch")))
(sha256
(base32
"1gsgzi9ayb4rablki3mqr11b0h8db4xg43df660marfpacmkfb01"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; no tests
#:phases (modify-phases %standard-phases
(delete 'configure)
(delete 'build)
(add-before 'install 'patch-scripts
(lambda* (#:key inputs #:allow-other-keys)
(let ((perl (string-append (assoc-ref inputs "perl")
"/bin/perl")))
;; This seems to take care of every shell script that
;; invokes Perl.
(substitute* (find-files "." ".*")
((" perl -")
(string-append " " perl " -"))))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((output (assoc-ref outputs "out"))
(sharedir (string-append output "/share/gitolite"))
(bindir (string-append output "/bin")))
(mkdir-p sharedir)
(mkdir-p bindir)
(system* "./install" "-to" sharedir)
;; Create symlinks for executable scripts in /bin.
(for-each (lambda (script)
(symlink (string-append sharedir "/" script)
(string-append bindir "/" script)))
'("gitolite" "gitolite-shell"))
#t))))))
(inputs
`(("perl" ,perl)))
;; git and openssh are propagated because trying to patch the source via
;; regexp matching is too brittle and prone to false positives.
(propagated-inputs
`(("git" ,git)
("openssh" ,openssh)))
(home-page "http://gitolite.com")
(synopsis "Git access control layer")
(description
"Gitolite is an access control layer on top of Git, providing fine access
control to Git repositories.")
(license gpl2)))
(define-public mercurial
(package
(name "mercurial")

12
gnu/packages/video.scm
View File

@ -570,13 +570,13 @@ treaming protocols.")
'("--enable-runtime-cpudetection"
"--target=i686-linux"))
("mips64el-linux"
'("--target=mips3-linux")))
"--disable-armv5te"
"--disable-armv6"
"--disable-armv6t2"
"--disable-armvfp"
'("--target=mips3-linux"))
(_ (list (string-append
"--target="
(or (%current-target-system)
(nix-system->gnu-triplet
(%current-system)))))))
"--disable-neon"
"--disable-thumb"
"--disable-iwmmxt"))))
%standard-phases)))
(home-page "http://www.mplayerhq.hu/design7/news.html")

11
gnu/packages/web.scm
View File

@ -94,14 +94,14 @@ and its related documentation.")
(define-public nginx
(package
(name "nginx")
(version "1.6.2")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (string-append "http://nginx.org/download/nginx-"
version ".tar.gz"))
(sha256
(base32
"060s77qxhkn02fjkcndsr0xppj2bppjzkj0gn84svrykb4lqqq5m"))))
"1mgkkmmwkhmpn68sdvbd73ssv6lpqhh864fsyvc1ij4hk4is3k13"))))
(build-system gnu-build-system)
(inputs `(("pcre" ,pcre)
("openssl" ,openssl)
@ -132,7 +132,12 @@ and its related documentation.")
(%current-system))
("x86_64-linux" "x86_64")
("i686-linux" "i686")
("mips64el-linux" "mips64"))))
("mips64el-linux" "mips64")
;; Prevent errors when querying
;; this package on unsupported
;; platforms, e.g. when running
;; "guix package --search="
(_ "UNSUPPORTED"))))
(string-append "--crossbuild="
system ":" release ":" machine)))))
(setenv "CC" "gcc")

5
gnu/packages/xfce.scm
View File

@ -397,8 +397,11 @@ allows you to shutdown the computer from Xfce.")
("libnotify" ,libnotify)
("libxcursor", libxcursor)
("libxi" ,libxi)
("libxklavier" ,libxklavier)
("libxrandr" ,libxrandr)
("libxfce4ui" ,libxfce4ui)))
("libxfce4ui" ,libxfce4ui)
("upower" ,upower)
("xf86-input-libinput" ,xf86-input-libinput)))
(home-page "http://www.xfce.org/")
(synopsis "Xfce settings manager")
(description

36
gnu/packages/xorg.scm
View File

@ -45,7 +45,8 @@
#:use-module (gnu packages python)
#:use-module (gnu packages xml)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages xdisorg))
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages freedesktop))
@ -2220,6 +2221,35 @@ devices, thus making direct access unnecessary.")
(description "X.org provides an implementation of the X Window System")
(license license:x11)))
(define-public xf86-input-libinput
(package
(name "xf86-input-libinput")
(version "0.8.0")
(source (origin
(method url-fetch)
(uri (string-append
"mirror://xorg/individual/driver/"
name "-" version ".tar.bz2"))
(sha256
(base32
"0fm4vrkw7azipbnwvc2l18g65z77pllsznaajd8q3zpg9ycb0li1"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags
(list (string-append "--with-sdkdir="
%output "/include/xorg"))))
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("libinput" ,libinput)
("xorg-server" ,xorg-server)))
(home-page "http://www.x.org/wiki/")
(synopsis "Xorg input driver")
(description
"This is an Xorg input driver based on libinput. It therefore supports
all input devices that libinput can handle, including most mice, keyboards,
tablets and touchscreens.")
(license license:x11)))
(define-public xf86-input-joystick
(package
@ -4271,7 +4301,7 @@ graphics cards.")
(define-public libxfont
(package
(name "libxfont")
(version "1.5.0")
(version "1.5.1")
(source
(origin
(method url-fetch)
@ -4281,7 +4311,7 @@ graphics cards.")
".tar.bz2"))
(sha256
(base32
"0py2c498lrq6wrj9al6nj57v2ypid9cz0zzhc0hjndgrmp254g1s"))))
"1630v3sfvwwlimb2ja10c84ql6v1mw9bdfhvan7pbybkgi99h25p"))))
(build-system gnu-build-system)
(propagated-inputs
`(("fontsproto" ,fontsproto)

2
guix/packages.scm
View File

@ -208,7 +208,7 @@ corresponds to the arguments expected by `set-path-environment-variable'."
(define %supported-systems
;; This is the list of system types that are supported. By default, we
;; expect all packages to build successfully here.
'("x86_64-linux" "i686-linux" "mips64el-linux"))
'("x86_64-linux" "i686-linux" "armhf-linux" "mips64el-linux"))
;; A package.
(define-record-type* <package>

6
tests/packages.scm
View File

@ -210,7 +210,11 @@
(unless (network-reachable?) (test-skip 1))
(test-equal "package-source-derivation, snippet"
"OK"
(let* ((file (search-bootstrap-binary "guile-2.0.9.tar.xz"
(let* ((file (search-bootstrap-binary (match (%current-system)
("armhf-linux"
"guile-2.0.11.tar.xz")
(_
"guile-2.0.9.tar.xz"))
(%current-system)))
(sha256 (call-with-input-file file port-sha256))
(fetch (lambda* (url hash-algo hash