gnu: samtools: Update to 1.9.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9. [origin]: Remove bundled htslib sources. [arguments]: Remove obsolete make-flags.
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@ -4997,7 +4997,7 @@ to the user's query of interest.")
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(define-public samtools
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(package
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(name "samtools")
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(version "1.8")
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(version "1.9")
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(source
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(origin
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(method url-fetch)
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@ -5006,15 +5006,19 @@ to the user's query of interest.")
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version "/samtools-" version ".tar.bz2"))
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(sha256
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(base32
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"05myg7bs90i68qbqab9cdg9rqj2xh39azibrx82ipzc5kcfvqhn9"))))
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"10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8"))
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(modules '((guix build utils)))
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(snippet '(begin
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;; Delete bundled htslib.
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(delete-file-recursively "htslib-1.9")
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#t))))
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(build-system gnu-build-system)
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(arguments
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`(#:modules ((ice-9 ftw)
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(ice-9 regex)
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(guix build gnu-build-system)
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(guix build utils))
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#:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")))
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#:configure-flags (list "--with-ncurses" "--with-htslib=system")
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#:configure-flags (list "--with-ncurses")
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'patch-tests
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