gnu: Add r-oligo.

* gnu/packages/bioconductor.scm (r-oligo): New variable.
master
Ricardo Wurmus 2019-09-15 22:50:31 +02:00
parent d6a5d9b24f
commit 4c63eeb8a4
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@ -1326,6 +1326,40 @@ initialization methods for classes used by the @code{oligo} and @code{crlmm}
packages.")
(license license:gpl2+)))
(define-public r-oligo
(package
(name "r-oligo")
(version "1.48.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "oligo" version))
(sha256
(base32
"0qkyz65zvry0syibjkvkshwijccna18jy0hlib0n5x4c8x9zs5df"))))
(properties `((upstream-name . "oligo")))
(build-system r-build-system)
(inputs `(("zlib" ,zlib)))
(propagated-inputs
`(("r-affxparser" ,r-affxparser)
("r-affyio" ,r-affyio)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-dbi" ,r-dbi)
("r-ff" ,r-ff)
("r-oligoclasses" ,r-oligoclasses)
("r-preprocesscore" ,r-preprocesscore)
("r-rsqlite" ,r-rsqlite)
("r-zlibbioc" ,r-zlibbioc)))
(home-page "https://bioconductor.org/packages/oligo/")
(synopsis "Preprocessing tools for oligonucleotide arrays")
(description
"This package provides a package to analyze oligonucleotide
arrays (expression/SNP/tiling/exon) at probe-level. It currently supports
Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
(license license:lgpl2.0+)))
(define-public r-qvalue
(package
(name "r-qvalue")