gnu: Add r-oligo.
* gnu/packages/bioconductor.scm (r-oligo): New variable.
This commit is contained in:
parent
d6a5d9b24f
commit
4c63eeb8a4
|
@ -1326,6 +1326,40 @@ initialization methods for classes used by the @code{oligo} and @code{crlmm}
|
||||||
packages.")
|
packages.")
|
||||||
(license license:gpl2+)))
|
(license license:gpl2+)))
|
||||||
|
|
||||||
|
(define-public r-oligo
|
||||||
|
(package
|
||||||
|
(name "r-oligo")
|
||||||
|
(version "1.48.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "oligo" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0qkyz65zvry0syibjkvkshwijccna18jy0hlib0n5x4c8x9zs5df"))))
|
||||||
|
(properties `((upstream-name . "oligo")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(inputs `(("zlib" ,zlib)))
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-affxparser" ,r-affxparser)
|
||||||
|
("r-affyio" ,r-affyio)
|
||||||
|
("r-biobase" ,r-biobase)
|
||||||
|
("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-biostrings" ,r-biostrings)
|
||||||
|
("r-dbi" ,r-dbi)
|
||||||
|
("r-ff" ,r-ff)
|
||||||
|
("r-oligoclasses" ,r-oligoclasses)
|
||||||
|
("r-preprocesscore" ,r-preprocesscore)
|
||||||
|
("r-rsqlite" ,r-rsqlite)
|
||||||
|
("r-zlibbioc" ,r-zlibbioc)))
|
||||||
|
(home-page "https://bioconductor.org/packages/oligo/")
|
||||||
|
(synopsis "Preprocessing tools for oligonucleotide arrays")
|
||||||
|
(description
|
||||||
|
"This package provides a package to analyze oligonucleotide
|
||||||
|
arrays (expression/SNP/tiling/exon) at probe-level. It currently supports
|
||||||
|
Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
|
||||||
|
(license license:lgpl2.0+)))
|
||||||
|
|
||||||
(define-public r-qvalue
|
(define-public r-qvalue
|
||||||
(package
|
(package
|
||||||
(name "r-qvalue")
|
(name "r-qvalue")
|
||||||
|
|
Loading…
Reference in New Issue