gnu: r-qvalue: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here... * gnu/packages/bioconductor.scm (r-qvalue): ...to here.
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@ -807,6 +807,35 @@ region sets and other genomic features.")
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"This package provides functions for plotting genomic data.")
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"This package provides functions for plotting genomic data.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-qvalue
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(package
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(name "r-qvalue")
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(version "2.14.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "qvalue" version))
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(sha256
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(base32
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"0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-ggplot2" ,r-ggplot2)
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("r-reshape2" ,r-reshape2)))
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(home-page "http://github.com/jdstorey/qvalue")
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(synopsis "Q-value estimation for false discovery rate control")
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(description
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"This package takes a list of p-values resulting from the simultaneous
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testing of many hypotheses and estimates their q-values and local @dfn{false
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discovery rate} (FDR) values. The q-value of a test measures the proportion
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of false positives incurred when that particular test is called significant.
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The local FDR measures the posterior probability the null hypothesis is true
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given the test's p-value. Various plots are automatically generated, allowing
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one to make sensible significance cut-offs. The software can be applied to
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problems in genomics, brain imaging, astrophysics, and data mining.")
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;; Any version of the LGPL.
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(license license:lgpl3+)))
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(define-public r-diffbind
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(define-public r-diffbind
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(package
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(package
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(name "r-diffbind")
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(name "r-diffbind")
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@ -10293,35 +10293,6 @@ quality controls, normalization, visualization, and further analysis are also
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provided.")
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provided.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-qvalue
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(package
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(name "r-qvalue")
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(version "2.14.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "qvalue" version))
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(sha256
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(base32
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"0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-ggplot2" ,r-ggplot2)
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("r-reshape2" ,r-reshape2)))
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(home-page "http://github.com/jdstorey/qvalue")
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(synopsis "Q-value estimation for false discovery rate control")
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(description
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"This package takes a list of p-values resulting from the simultaneous
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testing of many hypotheses and estimates their q-values and local @dfn{false
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discovery rate} (FDR) values. The q-value of a test measures the proportion
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of false positives incurred when that particular test is called significant.
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The local FDR measures the posterior probability the null hypothesis is true
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given the test's p-value. Various plots are automatically generated, allowing
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one to make sensible significance cut-offs. The software can be applied to
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problems in genomics, brain imaging, astrophysics, and data mining.")
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;; Any version of the LGPL.
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(license license:lgpl3+)))
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(define-public r-hdf5array
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(define-public r-hdf5array
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(package
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(package
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(name "r-hdf5array")
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(name "r-hdf5array")
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