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gnu: r-qvalue: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-12 22:06:05 +01:00
parent 557a1089c6
commit 4dc2ecc279
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2 changed files with 29 additions and 29 deletions
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29
gnu/packages/bioconductor.scm
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@ -807,6 +807,35 @@ region sets and other genomic features.")
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
(define-public r-qvalue
(package
(name "r-qvalue")
(version "2.14.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "qvalue" version))
(sha256
(base32
"0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-reshape2" ,r-reshape2)))
(home-page "http://github.com/jdstorey/qvalue")
(synopsis "Q-value estimation for false discovery rate control")
(description
"This package takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values and local @dfn{false
discovery rate} (FDR) values. The q-value of a test measures the proportion
of false positives incurred when that particular test is called significant.
The local FDR measures the posterior probability the null hypothesis is true
given the test's p-value. Various plots are automatically generated, allowing
one to make sensible significance cut-offs. The software can be applied to
problems in genomics, brain imaging, astrophysics, and data mining.")
;; Any version of the LGPL.
(license license:lgpl3+)))
(define-public r-diffbind
(package
(name "r-diffbind")

29
gnu/packages/bioinformatics.scm
View File

@ -10293,35 +10293,6 @@ quality controls, normalization, visualization, and further analysis are also
provided.")
(license license:artistic2.0)))
(define-public r-qvalue
(package
(name "r-qvalue")
(version "2.14.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "qvalue" version))
(sha256
(base32
"0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-reshape2" ,r-reshape2)))
(home-page "http://github.com/jdstorey/qvalue")
(synopsis "Q-value estimation for false discovery rate control")
(description
"This package takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values and local @dfn{false
discovery rate} (FDR) values. The q-value of a test measures the proportion
of false positives incurred when that particular test is called significant.
The local FDR measures the posterior probability the null hypothesis is true
given the test's p-value. Various plots are automatically generated, allowing
one to make sensible significance cut-offs. The software can be applied to
problems in genomics, brain imaging, astrophysics, and data mining.")
;; Any version of the LGPL.
(license license:lgpl3+)))
(define-public r-hdf5array
(package
(name "r-hdf5array")