gnu: Add genrich.
* gnu/packages/bioinformatics.scm (genrich): New variable.
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@ -13113,6 +13113,38 @@ descriptive settings file. The result is a set of comprehensive, interactive
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HTML reports with interesting findings about your samples.")
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HTML reports with interesting findings about your samples.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public genrich
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(package
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(name "genrich")
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(version "0.5")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/jsh58/Genrich.git")
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(commit (string-append "v" version))))
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(sha256
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(base32
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"0x0q6z0208n3cxzqjla4rgjqpyqgwpmz27852lcvzkzaigymq4zp"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; there are none
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(install-file "Genrich" (string-append (assoc-ref outputs "out") "/bin"))
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#t)))))
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(inputs
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`(("zlib" ,zlib)))
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(home-page "https://github.com/jsh58/Genrich")
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(synopsis "Detecting sites of genomic enrichment")
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(description "Genrich is a peak-caller for genomic enrichment
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assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated
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following the assay and produces a file detailing peaks of significant
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enrichment.")
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(license license:expat)))
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(define-public mantis
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(define-public mantis
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(let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
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(let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
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(revision "1"))
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(revision "1"))
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