gnu: Add rcas-web.
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
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@ -56,6 +56,7 @@
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages glib)
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#:use-module (gnu packages groff)
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#:use-module (gnu packages guile)
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#:use-module (gnu packages haskell)
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#:use-module (gnu packages image)
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#:use-module (gnu packages imagemagick)
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@ -7184,6 +7185,50 @@ library implementing most of the pipeline's features.")
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(home-page "https://github.com/BIMSBbioinfo/RCAS")
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(license license:expat)))
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(define-public rcas-web
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(package
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(name "rcas-web")
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(version "0.0.3")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/BIMSBbioinfo/rcas-web/"
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"releases/download/v" version
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"/rcas-web-" version ".tar.gz"))
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(sha256
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(base32
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"0d3my0g8i7js59n184zzzjdki7hgmhpi4rhfvk7i6jsw01ba04qq"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'install 'wrap-executable
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(json (assoc-ref inputs "guile-json"))
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(redis (assoc-ref inputs "guile-redis"))
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(path (string-append
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json "/share/guile/site/2.2:"
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redis "/share/guile/site/2.2")))
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(wrap-program (string-append out "/bin/rcas-web")
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`("GUILE_LOAD_PATH" ":" = (,path))
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`("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
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`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
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#t)))))
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(inputs
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`(("r" ,r)
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("r-rcas" ,r-rcas)
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("guile-next" ,guile-next)
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("guile-json" ,guile2.2-json)
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("guile-redis" ,guile2.2-redis)))
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(native-inputs
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`(("pkg-config" ,pkg-config)))
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(home-page "https://github.com/BIMSBbioinfo/rcas-web")
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(synopsis "Web interface for RNA-centric annotation system (RCAS)")
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(description "This package provides a simple web interface for the
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@dfn{RNA-centric annotation system} (RCAS).")
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(license license:agpl3+)))
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(define-public emboss
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(package
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(name "emboss")
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