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gnu: python-screed: Update to 1.0. 

* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
This commit is contained in:
Ricardo Wurmus 2018-10-21 22:58:30 +02:00
parent 0db75f7a79
commit 50e33c3a8c
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GPG Key ID: 197A5888235FACAC
1 changed files with 22 additions and 9 deletions
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@ -5602,25 +5602,38 @@ complexity samples.")
(define-public python-screed
(package
(name "python-screed")
(version "0.9")
(version "1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "screed" version))
(sha256
(base32
"18czszp9fkx3j6jr7y5kp6dfialscgddk05mw1zkhh2zhn0jd8i0"))))
"148vcb7w2wr6a4w6vs2bsxanbqibxfk490zbcbg4m61s8669zdjx"))))
(build-system python-build-system)
(arguments
`(#:phases
'(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
;; Tests must be run after installation, as the "screed" command does
;; not exist right after building.
(delete 'check)
(add-after 'install 'check
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(setenv "PYTHONPATH"
(string-append (getenv "PYTHONPATH") ":."))
(zero? (system* "nosetests" "--attr" "!known_failing")))))))
(string-append out "/lib/python"
(string-take (string-take-right
(assoc-ref inputs "python")
5) 3)
"/site-packages:"
(getenv "PYTHONPATH")))
(setenv "PATH" (string-append out "/bin:" (getenv "PATH"))))
(invoke "python" "setup.py" "test")
#t)))))
(native-inputs
`(("python-nose" ,python-nose)))
`(("python-pytest" ,python-pytest)
("python-pytest-cov" ,python-pytest-cov)
("python-pytest-runner" ,python-pytest-runner)))
(inputs
`(("python-bz2file" ,python-bz2file)))
(home-page "https://github.com/dib-lab/screed/")