gnu: Add r-hsmmsinglecell.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): New variable.master
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@ -33,6 +33,9 @@
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages web))
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#:use-module (gnu packages web))
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;;; Annotations
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(define-public r-bsgenome-celegans-ucsc-ce6
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(define-public r-bsgenome-celegans-ucsc-ce6
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(package
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(package
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(name "r-bsgenome-celegans-ucsc-ce6")
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(name "r-bsgenome-celegans-ucsc-ce6")
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@ -647,6 +650,44 @@ based on the knownGene track.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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;;; Experiment data
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(define-public r-hsmmsinglecell
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(package
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(name "r-hsmmsinglecell")
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(version "1.2.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/experiment/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/experiment/src/contrib/"
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"HSMMSingleCell_" version ".tar.gz"))
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(sha256
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(base32
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"1vxnr8gr6md85g39csy7g2sqqajiqgyvznys2qa9yixd2b01yph9"))))
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(properties
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`((upstream-name . "HSMMSingleCell")))
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(build-system r-build-system)
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(home-page "https://www.bioconductor.org/packages/HSMMSingleCell/")
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(synopsis "Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)")
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(description
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"Skeletal myoblasts undergo a well-characterized sequence of
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morphological and transcriptional changes during differentiation. In this
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experiment, primary @dfn{human skeletal muscle myoblasts} (HSMM) were expanded
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under high mitogen conditions (GM) and then differentiated by switching to
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low-mitogen media (DM). RNA-Seq libraries were sequenced from each of several
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hundred cells taken over a time-course of serum-induced differentiation.
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Between 49 and 77 cells were captured at each of four time points (0, 24, 48,
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72 hours) following serum switch using the Fluidigm C1 microfluidic system.
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RNA from each cell was isolated and used to construct mRNA-Seq libraries,
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which were then sequenced to a depth of ~4 million reads per library,
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resulting in a complete gene expression profile for each cell.")
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(license license:artistic2.0)))
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;;; Packages
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(define-public r-biocgenerics
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(define-public r-biocgenerics
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(package
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(package
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(name "r-biocgenerics")
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(name "r-biocgenerics")
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