gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.

* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
This commit is contained in:
Ricardo Wurmus 2016-02-25 14:01:14 +01:00
parent 937690f909
commit 55a9a8c2b9
2 changed files with 38 additions and 38 deletions

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@ -838,6 +838,44 @@ well as many of the command line options.")
multiple sequence alignments.") multiple sequence alignments.")
(license license:expat))) (license license:expat)))
(define-public python-pysam
(package
(name "python-pysam")
(version "0.8.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
version ".tar.gz"))
(sha256
(base32
"1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; tests are excluded in the manifest
#:phases
(alist-cons-before
'build 'set-flags
(lambda _
(setenv "LDFLAGS" "-lncurses")
(setenv "CFLAGS" "-D_CURSES_LIB=1"))
%standard-phases)))
(inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)
("ncurses" ,ncurses)
("zlib" ,zlib)))
(home-page "https://github.com/pysam-developers/pysam")
(synopsis "Python bindings to the SAMtools C API")
(description
"Pysam is a Python module for reading and manipulating files in the
SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It
also includes an interface for tabix.")
(license license:expat)))
(define-public python2-pysam
(package-with-python2 python-pysam))
(define-public clipper (define-public clipper
(package (package
(name "clipper") (name "clipper")

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@ -1040,44 +1040,6 @@ get the local timezone information, unless you know the zoneinfo name, and
under several distributions that's hard or impossible to figure out.") under several distributions that's hard or impossible to figure out.")
(license cc0))) (license cc0)))
(define-public python-pysam
(package
(name "python-pysam")
(version "0.8.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
version ".tar.gz"))
(sha256
(base32
"1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; tests are excluded in the manifest
#:phases
(alist-cons-before
'build 'set-flags
(lambda _
(setenv "LDFLAGS" "-lncurses")
(setenv "CFLAGS" "-D_CURSES_LIB=1"))
%standard-phases)))
(inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)
("ncurses" ,ncurses)
("zlib" ,zlib)))
(home-page "https://github.com/pysam-developers/pysam")
(synopsis "Python bindings to the SAMtools C API")
(description
"Pysam is a Python module for reading and manipulating files in the
SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It
also includes an interface for tabix.")
(license license:expat)))
(define-public python2-pysam
(package-with-python2 python-pysam))
(define-public python2-pysqlite (define-public python2-pysqlite
(package (package
(name "python2-pysqlite") (name "python2-pysqlite")