gnu: Add r-refgenome.

* gnu/packages/cran.scm (r-refgenome): New variable.
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Ricardo Wurmus 2018-07-24 14:16:48 +02:00 committed by Ricardo Wurmus
parent 0fccd15f78
commit 5850c5b327
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@ -4694,3 +4694,31 @@ Group (Non-)Overlap considerations.")
@item miscellaneous other utilities. @item miscellaneous other utilities.
@end itemize\n") @end itemize\n")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-refgenome
(package
(name "r-refgenome")
(version "1.7.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "refGenome" version))
(sha256
(base32
"15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"))))
(properties `((upstream-name . "refGenome")))
(build-system r-build-system)
(propagated-inputs
`(("r-dbi" ,r-dbi)
("r-doby" ,r-doby)
("r-rsqlite" ,r-rsqlite)))
(home-page "https://cran.r-project.org/web/packages/refGenome/")
(synopsis
"Gene and splice site annotation using annotation data from Ensembl and UCSC")
(description
"This package contains functionality for importing and managing of
downloaded genome annotation data from the Ensembl genome browser (European
Bioinformatics Institute) and from the UCSC genome browser (University of
California, Santa Cruz) and annotation routines for genomic positions and
splice site positions.")
(license license:gpl2)))