Merge branch 'master' into staging
This commit is contained in:
Marius Bakke
commit
58bf51b4c0
|
|
@ -6466,10 +6466,11 @@ path. @var{references} is the list of store paths referred to by the
|
|||
resulting store path.
|
||||
@end deffn
|
||||
|
||||
@deffn {Scheme Procedure} build-derivations @var{server} @var{derivations}
|
||||
Build @var{derivations} (a list of @code{<derivation>} objects or
|
||||
derivation paths), and return when the worker is done building them.
|
||||
Return @code{#t} on success.
|
||||
@deffn {Scheme Procedure} build-derivations @var{store} @var{derivations} @
|
||||
[@var{mode}]
|
||||
Build @var{derivations}, a list of @code{<derivation>} objects, @file{.drv}
|
||||
file names, or derivation/output pairs, using the specified
|
||||
@var{mode}---@code{(build-mode normal)} by default.
|
||||
@end deffn
|
||||
|
||||
Note that the @code{(guix monads)} module provides a monad as well as
|
||||
|
|
@ -22723,10 +22724,10 @@ Extra options will be passed to @code{git daemon}, please run
|
|||
@end deftp
|
||||
|
||||
The @code{git://} protocol lacks authentication. When you pull from a
|
||||
repository fetched via @code{git://}, you don't know that the data you
|
||||
receive was modified is really coming from the specified host, and you
|
||||
have your connection is subject to eavesdropping. It's better to use an
|
||||
authenticated and encrypted transport, such as @code{https}. Although Git allows you
|
||||
repository fetched via @code{git://}, you don't know whether the data you
|
||||
receive was modified or is even coming from the specified host, and your
|
||||
connection is subject to eavesdropping. It's better to use an authenticated
|
||||
and encrypted transport, such as @code{https}. Although Git allows you
|
||||
to serve repositories using unsophisticated file-based web servers,
|
||||
there is a faster protocol implemented by the @code{git-http-backend}
|
||||
program. This program is the back-end of a proper Git web service. It
|
||||
|
|
@ -24197,6 +24198,47 @@ setuid-root (@pxref{Setuid Programs}) such that unprivileged users can invoke
|
|||
@command{singularity run} and similar commands.
|
||||
@end defvr
|
||||
|
||||
@cindex Nix
|
||||
@subsubheading Nix service
|
||||
|
||||
The @code{(gnu services nix)} module provides the following service.
|
||||
|
||||
@defvr {Scheme Variable} nix-service-type
|
||||
|
||||
This is the type of the service that runs build daemon of the
|
||||
@url{https://nixos.org/nix/, Nix} package manager. Here is an example showing
|
||||
how to use it:
|
||||
|
||||
@example
|
||||
(use-modules (gnu))
|
||||
(use-service-modules nix)
|
||||
(use-package-modules package-management)
|
||||
|
||||
(operating-system
|
||||
;; @dots{}
|
||||
(packages (append (list nix)
|
||||
%base-packages))
|
||||
|
||||
(services (append (list (service nix-service-type))
|
||||
%base-services)))
|
||||
@end example
|
||||
|
||||
After @command{guix system reconfigure} configure Nix for your user:
|
||||
|
||||
@itemize
|
||||
@item Add a Nix channel and update it. See
|
||||
@url{https://nixos.org/nix/manual/, Nix Package Manager Guide}.
|
||||
|
||||
@item Create a symlink to your profile and activate Nix profile:
|
||||
@end itemize
|
||||
|
||||
@example
|
||||
$ ln -s "/nix/var/nix/profiles/per-user/$USER/profile" ~/.nix-profile
|
||||
$ source /run/current-system/profile/etc/profile.d/nix.sh
|
||||
@end example
|
||||
|
||||
@end defvr
|
||||
|
||||
@node Setuid Programs
|
||||
@section Setuid Programs
|
||||
|
||||
|
|
|
|||
|
|
@ -29,7 +29,7 @@
|
|||
;;; Code:
|
||||
|
||||
(define %artwork-repository
|
||||
(let ((commit "b975164c19c9c0f5d91e5731ec1683e7510c1326"))
|
||||
(let ((commit "2f2fe74c1078be605a6a93c2193fd6c715cebbb0"))
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
|
|
@ -39,6 +39,6 @@
|
|||
"-checkout"))
|
||||
(sha256
|
||||
(base32
|
||||
"1fad7az077q9ds3jhp00jfsr8rfw4ws042wmnai52k7jv4kbxwyf")))))
|
||||
"0c8r0phvm3wgf914n2kw1461cwdjl2zbzqvzq9x7d9pwkgv7xmq7")))))
|
||||
|
||||
;;; artwork.scm ends here
|
||||
|
|
|
|||
|
|
@ -17,7 +17,7 @@
|
|||
# Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
|
||||
# Copyright © 2017, 2018 Gábor Boskovits <boskovits@gmail.com>
|
||||
# Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
|
||||
# Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
|
||||
# Copyright © 2018, 2019 Oleg Pykhalov <go.wigust@gmail.com>
|
||||
# Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com>
|
||||
# Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
|
||||
#
|
||||
|
|
@ -526,6 +526,7 @@ GNU_SYSTEM_MODULES = \
|
|||
%D%/services/messaging.scm \
|
||||
%D%/services/monitoring.scm \
|
||||
%D%/services/networking.scm \
|
||||
%D%/services/nix.scm \
|
||||
%D%/services/nfs.scm \
|
||||
%D%/services/security-token.scm \
|
||||
%D%/services/shepherd.scm \
|
||||
|
|
@ -662,6 +663,7 @@ dist_patch_DATA = \
|
|||
%D%/packages/patches/aegisub-icu59-include-unistr.patch \
|
||||
%D%/packages/patches/aegisub-boost68.patch \
|
||||
%D%/packages/patches/agg-am_c_prototype.patch \
|
||||
%D%/packages/patches/allegro-mesa-18.2.5-and-later.patch \
|
||||
%D%/packages/patches/amule-crypto-6.patch \
|
||||
%D%/packages/patches/antiword-CVE-2014-8123.patch \
|
||||
%D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch \
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
;;; GNU Guix --- Functional package management for GNU
|
||||
;;; Copyright © 2016 John Darrington <jmd@gnu.org>
|
||||
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
|
||||
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
|
||||
;;; Copyright © 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
|
||||
;;;
|
||||
;;; This file is part of GNU Guix.
|
||||
|
|
@ -37,15 +37,15 @@
|
|||
(define-public cfitsio
|
||||
(package
|
||||
(name "cfitsio")
|
||||
(version "3.450")
|
||||
(version "3.47")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
|
||||
name (string-replace-substring version "." "") ".tar.gz"))
|
||||
name "-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32 "0bmrkw6w65zb0k3mszaaqy1f4zjm2hl7njww74nb5v38wvdi4q5z"))))
|
||||
(base32 "1vzlxnrjckz78p2wf148v2z3krkwnykfqvlj42sz3q711vqid1a1"))))
|
||||
(build-system gnu-build-system)
|
||||
;; XXX Building with curl currently breaks wcslib. It doesn't use
|
||||
;; pkg-config and hence won't link with -lcurl.
|
||||
|
|
|
|||
|
|
@ -3701,7 +3701,7 @@ library.")
|
|||
(define-public faudio
|
||||
(package
|
||||
(name "faudio")
|
||||
(version "19.06")
|
||||
(version "19.06.07")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -3710,7 +3710,7 @@ library.")
|
|||
(commit version)))
|
||||
(file-name (string-append name "-" version "-checkout"))
|
||||
(sha256
|
||||
(base32 "1azjf972hik1cizsblbvfp38xz7dx368pbpw3pd6z1xk9mnrhi6s"))))
|
||||
(base32 "1w37qp279lgpyvslwz3wlb4fp0i68ncd411rqdlk5s71b1zz466n"))))
|
||||
(arguments
|
||||
'(#:tests? #f ; No tests.
|
||||
#:configure-flags '("-DFFMPEG=ON")))
|
||||
|
|
|
|||
|
|
@ -3621,14 +3621,14 @@ investigation using RNA-seq data.")
|
|||
(define-public r-aucell
|
||||
(package
|
||||
(name "r-aucell")
|
||||
(version "1.6.0")
|
||||
(version "1.6.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "AUCell" version))
|
||||
(sha256
|
||||
(base32
|
||||
"025q1as9pifbxa7hidlz634q6d7l73zx8mqy4rjbfrk7d5615xvm"))))
|
||||
"1vd8w6dygn1b5bwlha09mm6fbwyj07pmawpv53agcg1y7jlxs31b"))))
|
||||
(properties `((upstream-name . "AUCell")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
|
|
@ -4438,14 +4438,14 @@ interpretation.")
|
|||
(define-public r-rhisat2
|
||||
(package
|
||||
(name "r-rhisat2")
|
||||
(version "1.0.1")
|
||||
(version "1.0.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "Rhisat2" version))
|
||||
(sha256
|
||||
(base32
|
||||
"01jhj5vvfl4n2d0nl3nd1iw9nii85mgw2adnrmxb8wwlxgy240vr"))))
|
||||
"1y3zqvk1vbcb10r1myh6f5yzjvf7bhwhpiq78bs1k6spli4bzj0q"))))
|
||||
(properties `((upstream-name . "Rhisat2")))
|
||||
(build-system r-build-system)
|
||||
(native-inputs
|
||||
|
|
@ -4606,3 +4606,74 @@ expression data to predict switches in regulatory activity between two
|
|||
conditions. A Bayesian network is used to model the regulatory structure and
|
||||
Markov-Chain-Monte-Carlo is applied to sample the activity states.")
|
||||
(license license:gpl2+)))
|
||||
|
||||
(define-public r-ropls
|
||||
(package
|
||||
(name "r-ropls")
|
||||
(version "1.16.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "ropls" version))
|
||||
(sha256
|
||||
(base32
|
||||
"099nv9dgmw3avkxv7cd27r16yj56svjlp5q4i389yp1n0r5zhyl2"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs `(("r-biobase" ,r-biobase)))
|
||||
(native-inputs
|
||||
`(("r-knitr" ,r-knitr))) ; for vignettes
|
||||
(home-page "https://dx.doi.org/10.1021/acs.jproteome.5b00354")
|
||||
(synopsis "Multivariate analysis and feature selection of omics data")
|
||||
(description
|
||||
"Latent variable modeling with @dfn{Principal Component Analysis} (PCA)
|
||||
and @dfn{Partial Least Squares} (PLS) are powerful methods for visualization,
|
||||
regression, classification, and feature selection of omics data where the
|
||||
number of variables exceeds the number of samples and with multicollinearity
|
||||
among variables. @dfn{Orthogonal Partial Least Squares} (OPLS) enables to
|
||||
separately model the variation correlated (predictive) to the factor of
|
||||
interest and the uncorrelated (orthogonal) variation. While performing
|
||||
similarly to PLS, OPLS facilitates interpretation.
|
||||
|
||||
This package provides imlementations of PCA, PLS, and OPLS for multivariate
|
||||
analysis and feature selection of omics data. In addition to scores, loadings
|
||||
and weights plots, the package provides metrics and graphics to determine the
|
||||
optimal number of components (e.g. with the R2 and Q2 coefficients), check the
|
||||
validity of the model by permutation testing, detect outliers, and perform
|
||||
feature selection (e.g. with Variable Importance in Projection or regression
|
||||
coefficients).")
|
||||
(license license:cecill)))
|
||||
|
||||
(define-public r-biosigner
|
||||
(package
|
||||
(name "r-biosigner")
|
||||
(version "1.12.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "biosigner" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1643iya40v6whb7lw7y34w5sanbasvj4yhvcygbip667yhphyv5b"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-biobase" ,r-biobase)
|
||||
("r-e1071" ,r-e1071)
|
||||
("r-randomforest" ,r-randomforest)
|
||||
("r-ropls" ,r-ropls)))
|
||||
(native-inputs
|
||||
`(("r-knitr" ,r-knitr)
|
||||
("r-rmarkdown" ,r-rmarkdown)
|
||||
("pandoc" ,ghc-pandoc)
|
||||
("pandoc-citeproc" ,ghc-pandoc-citeproc))) ; all for vignettes
|
||||
(home-page "https://bioconductor.org/packages/biosigner/")
|
||||
(synopsis "Signature discovery from omics data")
|
||||
(description
|
||||
"Feature selection is critical in omics data analysis to extract
|
||||
restricted and meaningful molecular signatures from complex and high-dimension
|
||||
data, and to build robust classifiers. This package implements a method to
|
||||
assess the relevance of the variables for the prediction performances of the
|
||||
classifier. The approach can be run in parallel with the PLS-DA, Random
|
||||
Forest, and SVM binary classifiers. The signatures and the corresponding
|
||||
'restricted' models are returned, enabling future predictions on new
|
||||
datasets.")
|
||||
(license license:cecill)))
|
||||
|
|
|
|||
|
|
@ -7373,13 +7373,13 @@ S4Vectors package itself.")
|
|||
(define-public r-iranges
|
||||
(package
|
||||
(name "r-iranges")
|
||||
(version "2.18.0")
|
||||
(version "2.18.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "IRanges" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0g06y6xlm2q7p7g7phfc8qj14pqpgbb0mkyjzkfgsrwjmzvpwy6m"))))
|
||||
"1d64sh43pfc9vj2l7y7x6sb44l67wlnn3dzygp7ws0smn06mardq"))))
|
||||
(properties
|
||||
`((upstream-name . "IRanges")))
|
||||
(build-system r-build-system)
|
||||
|
|
@ -9370,14 +9370,14 @@ structure (pcaRes) to provide a common interface to the PCA results.")
|
|||
(define-public r-msnbase
|
||||
(package
|
||||
(name "r-msnbase")
|
||||
(version "2.10.0")
|
||||
(version "2.10.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "MSnbase" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1lqdlyvs2c9g55zf8gnw142ps4jid644fhfvclnax7sjjwrqdjzv"))))
|
||||
"0z63yqazkycq0zbbarq9ida6al35hv3g7g9g7s7bss4gh0hk7lhd"))))
|
||||
(properties `((upstream-name . "MSnbase")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
|
|
|
|||
|
|
@ -2819,14 +2819,14 @@ color labels, layout, etc.")
|
|||
(define-public r-stringdist
|
||||
(package
|
||||
(name "r-stringdist")
|
||||
(version "0.9.5.1")
|
||||
(version "0.9.5.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "stringdist" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"))))
|
||||
"0nw8c317qkfq63pr0prl0hx522ddfq4cbgixb5r4pq3fxk9z303l"))))
|
||||
(build-system r-build-system)
|
||||
(home-page "https://github.com/markvanderloo/stringdist")
|
||||
(synopsis "Approximate string matching and string distance functions")
|
||||
|
|
@ -3583,14 +3583,14 @@ Markdown documents.")
|
|||
(define-public r-seriation
|
||||
(package
|
||||
(name "r-seriation")
|
||||
(version "1.2-5")
|
||||
(version "1.2-7")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "seriation" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0sk4wfwxxhz3nwbcsfshb93gra4c9p5pvpsz00d7f9nkkmhs97ws"))))
|
||||
"0dbz5b5msy4fr2whhphyriqk1xc6305zpjq59rrwxyz3d7rzwpa6"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-cluster" ,r-cluster)
|
||||
|
|
@ -3833,14 +3833,14 @@ supports arbitrary vertex/edge/graph attributes.")
|
|||
(define-public r-statnet-common
|
||||
(package
|
||||
(name "r-statnet-common")
|
||||
(version "4.2.0")
|
||||
(version "4.3.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "statnet.common" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0q942g6kqmqxfss1cxb3yg8y5r1k1h5cyy99s1cfisrn6hqc6xhi"))))
|
||||
"0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3"))))
|
||||
(properties
|
||||
`((upstream-name . "statnet.common")))
|
||||
(build-system r-build-system)
|
||||
|
|
@ -4033,14 +4033,14 @@ financial trading strategies.")
|
|||
(define-public r-tseries
|
||||
(package
|
||||
(name "r-tseries")
|
||||
(version "0.10-46")
|
||||
(version "0.10-47")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "tseries" version))
|
||||
(sha256
|
||||
(base32
|
||||
"08kjw0bfj5gfcrxpblwqxwna8a5g9gnr7ya61qb02r263pyhm50j"))))
|
||||
"0yzvc9djp3angvxdxqi60wi726y76ablsb71q88ycvw0avgpf8r0"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-quadprog" ,r-quadprog)
|
||||
|
|
@ -5933,22 +5933,22 @@ information are missing.")
|
|||
(define-public r-sjlabelled
|
||||
(package
|
||||
(name "r-sjlabelled")
|
||||
(version "1.0.17")
|
||||
(version "1.1.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "sjlabelled" version))
|
||||
(sha256
|
||||
(base32
|
||||
"00c0c22ynpihgf2bvmcfnkvqwqvxax2zzb7wldsmg2f7z5a32aa6"))))
|
||||
"0rnmlwpp41h04dzfjd5ncvzjzs43slaimb4v2in1axznv3haafyc"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-dplyr" ,r-dplyr)
|
||||
("r-haven" ,r-haven)
|
||||
`(("r-haven" ,r-haven)
|
||||
("r-insight" ,r-insight)
|
||||
("r-magrittr" ,r-magrittr)
|
||||
("r-purrr" ,r-purrr)
|
||||
("r-rlang" ,r-rlang)))
|
||||
("r-rlang" ,r-rlang)
|
||||
("r-tidyselect" ,r-tidyselect)))
|
||||
(home-page "https://github.com/strengejacke/sjlabelled")
|
||||
(synopsis "Labelled data utility functions")
|
||||
(description
|
||||
|
|
@ -6364,14 +6364,14 @@ containing one or more SNPs that evolved under directional selection.")
|
|||
(define-public r-proc
|
||||
(package
|
||||
(name "r-proc")
|
||||
(version "1.14.0")
|
||||
(version "1.15.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "pROC" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0ki1pvj5iaki81crapvwqllg5avn5qlvv62axnsdkdcmv9xc3wg0"))))
|
||||
"1dxxkwdhxfnj2znq4c5ggrr9m5klh5pmfxg17rz59vr2hfb73m24"))))
|
||||
(properties `((upstream-name . "pROC")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
|
|
@ -7850,25 +7850,26 @@ detection, parallelism through BLAS and parallel user templates.")
|
|||
(define-public r-sjstats
|
||||
(package
|
||||
(name "r-sjstats")
|
||||
(version "0.17.4")
|
||||
(version "0.17.5")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "sjstats" version))
|
||||
(sha256
|
||||
(base32
|
||||
"012hp9m17xzjnsfvjjz2wdfgxm3irsrfx0zmahfnfmgdrwxd5vk5"))))
|
||||
"1x9ybvz84vgaabmqp4z6crbv5q6kqjg6msk1spbr11zx9dbj06ca"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-broom" ,r-broom)
|
||||
`(("r-bayestestr" ,r-bayestestr)
|
||||
("r-broom" ,r-broom)
|
||||
("r-dplyr" ,r-dplyr)
|
||||
("r-emmeans" ,r-emmeans)
|
||||
("r-insight" ,r-insight)
|
||||
("r-lme4" ,r-lme4)
|
||||
("r-magrittr" ,r-magrittr)
|
||||
("r-mass" ,r-mass)
|
||||
("r-matrix" ,r-matrix)
|
||||
("r-modelr" ,r-modelr)
|
||||
("r-performance" ,r-performance)
|
||||
("r-purrr" ,r-purrr)
|
||||
("r-rlang" ,r-rlang)
|
||||
("r-sjlabelled" ,r-sjlabelled)
|
||||
|
|
@ -7948,14 +7949,14 @@ ROPE percentage and pd).")
|
|||
(define-public r-performance
|
||||
(package
|
||||
(name "r-performance")
|
||||
(version "0.1.0")
|
||||
(version "0.2.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "performance" version))
|
||||
(sha256
|
||||
(base32
|
||||
"19lfx25hkavzbycrh6hq4v24a0dz4s60ryq6jyihjlxgrb9g7cnw"))))
|
||||
"1pzd6z7i1jxr2xi1shg3d0bxlbpmjl7kpmwgjnfys6syv57znd1z"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-bayestestr" ,r-bayestestr)
|
||||
|
|
@ -9766,14 +9767,14 @@ the combination of non-negative and non-positive constraints.")
|
|||
(define-public r-iso
|
||||
(package
|
||||
(name "r-iso")
|
||||
(version "0.0-17")
|
||||
(version "0.0-18")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "Iso" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0lljc99sdzdqj6d56qbsggibr6pkdwkh821bj70ianikyvmdc1y0"))))
|
||||
"014mm5b1f7i6nwlz3kyg1biph0y542kcx5bd13p68cv5a928qzid"))))
|
||||
(properties `((upstream-name . "Iso")))
|
||||
(build-system r-build-system)
|
||||
(native-inputs `(("gfortran" ,gfortran)))
|
||||
|
|
@ -11025,14 +11026,14 @@ machine or distributed on a compute cluster.")
|
|||
(define-public r-rsvd
|
||||
(package
|
||||
(name "r-rsvd")
|
||||
(version "1.0.0")
|
||||
(version "1.0.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "rsvd" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0vjhrvnkl9rmvl8sv2kac5sd10z3fgxymb676ynxzc2pmhydy3an"))))
|
||||
"1faskhf5j2bj9f971qljsmh182g3rnyilj1wwijz530a6skxidzz"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-matrix" ,r-matrix)))
|
||||
|
|
|
|||
|
|
@ -33,6 +33,7 @@
|
|||
;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
|
||||
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
|
||||
;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
|
||||
;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us>
|
||||
;;;
|
||||
;;; This file is part of GNU Guix.
|
||||
;;;
|
||||
|
|
@ -108,6 +109,7 @@
|
|||
#:use-module (guix download)
|
||||
#:use-module (guix bzr-download)
|
||||
#:use-module (guix git-download)
|
||||
#:use-module (guix build-system emacs)
|
||||
#:use-module (guix build-system gnu)
|
||||
#:use-module (guix build-system go)
|
||||
#:use-module (guix build-system perl)
|
||||
|
|
@ -928,8 +930,7 @@ organized in a hash table or B+ tree.")
|
|||
(assoc-ref %build-inputs "bash:include")
|
||||
"/include/bash"))))
|
||||
|
||||
(native-inputs `(("emacs" ,emacs-minimal)
|
||||
("bc" ,bc)
|
||||
(native-inputs `(("bc" ,bc)
|
||||
("bash:include" ,bash "include")
|
||||
("check" ,check)
|
||||
("libuuid" ,util-linux)
|
||||
|
|
@ -948,6 +949,26 @@ types are supported, as is encryption.")
|
|||
(license license:gpl3+)
|
||||
(home-page "https://www.gnu.org/software/recutils/")))
|
||||
|
||||
(define-public emacs-recutils
|
||||
(package
|
||||
(inherit recutils)
|
||||
(name "emacs-recutils")
|
||||
(build-system emacs-build-system)
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'change-directory
|
||||
(lambda _
|
||||
(chdir "etc")
|
||||
#t)))))
|
||||
(native-inputs '())
|
||||
(inputs '())
|
||||
(synopsis "Emacs mode for working with recutils database files")
|
||||
(description "This package provides an Emacs major mode @code{rec-mode}
|
||||
for working with GNU Recutils text-based, human-editable databases. It
|
||||
supports editing, navigation, and querying of recutils database files
|
||||
including field and record folding.")))
|
||||
|
||||
(define-public rocksdb
|
||||
(package
|
||||
(name "rocksdb")
|
||||
|
|
|
|||
|
|
@ -8534,18 +8534,21 @@ key. Optionally, a mouse pop-up can be added by binding
|
|||
(license license:gpl3+)))
|
||||
|
||||
(define-public emacs-idris-mode
|
||||
(let ((commit "acc8835449475d7cd205aba213fdd3d41c38ba40")
|
||||
(revision "0"))
|
||||
(package
|
||||
(name "emacs-idris-mode")
|
||||
(version "0.9.19")
|
||||
(version (git-version "0.9.19" revision commit))
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"http://stable.melpa.org/packages/idris-mode-"
|
||||
version ".tar"))
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/idris-hackers/idris-mode.git")
|
||||
(commit commit)))
|
||||
(file-name (git-file-name name commit))
|
||||
(sha256
|
||||
(base32
|
||||
"16hl2s22l3wc9drnwzw6hn7xrm49ml9lii0s6k218dgahdgsncmf"))))
|
||||
"0n9xbknc68id0mf8hbfmawi8qpvrs47ix807sk9ffv2g3ik32kk6"))))
|
||||
(build-system emacs-build-system)
|
||||
(propagated-inputs
|
||||
`(("emacs-prop-menu" ,emacs-prop-menu)))
|
||||
|
|
@ -8556,7 +8559,7 @@ key. Optionally, a mouse pop-up can be added by binding
|
|||
"This is an Emacs mode for editing Idris code. It requires the latest
|
||||
version of Idris, and some features may rely on the latest Git version of
|
||||
Idris.")
|
||||
(license license:gpl3+)))
|
||||
(license license:gpl3+))))
|
||||
|
||||
(define-public emacs-browse-at-remote
|
||||
(package
|
||||
|
|
|
|||
|
|
@ -733,7 +733,7 @@ mixed vector/bitmap output.")
|
|||
(define-public virtualgl
|
||||
(package
|
||||
(name "virtualgl")
|
||||
(version "2.6.1")
|
||||
(version "2.6.2")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -742,7 +742,7 @@ mixed vector/bitmap output.")
|
|||
(commit version)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "04fdwm6mz76lw4iwd5m7yxjfhpa0rpxd357bv5smk5lclnlbz1bv"))))
|
||||
(base32 "0yyc553xsb5n0rx7jp9p4wdbd7md07b3qrkf3ssyjavqqg908qg9"))))
|
||||
(arguments
|
||||
`(#:tests? #f ; no tests are available
|
||||
#:configure-flags (list
|
||||
|
|
|
|||
|
|
@ -2115,7 +2115,7 @@ Hints specification (EWMH).")
|
|||
(define-public gnumeric
|
||||
(package
|
||||
(name "gnumeric")
|
||||
(version "1.12.44")
|
||||
(version "1.12.45")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "mirror://gnome/sources/gnumeric/"
|
||||
|
|
@ -2123,7 +2123,7 @@ Hints specification (EWMH).")
|
|||
"gnumeric-" version ".tar.xz"))
|
||||
(sha256
|
||||
(base32
|
||||
"0147962c6ybdsj57rz95nla0rls7g545wc2n7pz59zmzyd5pksk0"))))
|
||||
"0c8dl1kvnj3g32qy3s92qpqpqfy0in59cx005gjvvzsflahav61h"))))
|
||||
(build-system glib-or-gtk-build-system)
|
||||
(arguments
|
||||
`(;; The gnumeric developers don't worry much about failing tests.
|
||||
|
|
@ -5467,7 +5467,7 @@ to virtual private networks (VPNs) via OpenVPN.")
|
|||
(define-public mobile-broadband-provider-info
|
||||
(package
|
||||
(name "mobile-broadband-provider-info")
|
||||
(version "20170310")
|
||||
(version "20190116")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
|
|
@ -5476,10 +5476,10 @@ to virtual private networks (VPNs) via OpenVPN.")
|
|||
"mobile-broadband-provider-info-" version ".tar.xz"))
|
||||
(sha256
|
||||
(base32
|
||||
"0fxm11x8k9hxjg8l5inaldfmmjnwkay3ibjv899jra03bv4h6kql"))))
|
||||
"16y5lc7pfdvai9c8xwb825zc3v46039gghbip13fqslf5gw11fic"))))
|
||||
(build-system gnu-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f)) ; No tests
|
||||
`(#:tests? #f)) ; no tests
|
||||
(home-page "https://wiki.gnome.org/Projects/NetworkManager")
|
||||
(synopsis "Database of broadband connection configuration")
|
||||
(description "Database of broadband connection configuration.")
|
||||
|
|
|
|||
|
|
@ -1600,7 +1600,7 @@ identical visual appearance.")
|
|||
(define-public grim
|
||||
(package
|
||||
(name "grim")
|
||||
(version "1.1")
|
||||
(version "1.2.0")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -1609,7 +1609,7 @@ identical visual appearance.")
|
|||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1bcvkggqszcwy6hg8g4mch3yr25ic0baafbd90af5s5mrhrjxxxz"))))
|
||||
(base32 "0brljl4zfbn5mh9hkfrfkvd27c5y9vdkgap9r1hrfy9r1x20sskn"))))
|
||||
(build-system meson-build-system)
|
||||
(native-inputs `(("pkg-config" ,pkg-config)))
|
||||
(inputs `(("cairo" ,cairo)
|
||||
|
|
@ -1626,7 +1626,7 @@ identical visual appearance.")
|
|||
(define-public slurp
|
||||
(package
|
||||
(name "slurp")
|
||||
(version "1.0.1")
|
||||
(version "1.2.0")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -1635,7 +1635,7 @@ identical visual appearance.")
|
|||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "072lkwhpvr753wfqzmd994bnhbrgfavxcgqcyml7abab28sdhs1y"))))
|
||||
(base32 "0580m6kaiilgsrcj608r837r37sl6a25y7w21p7d6ij20fs3gvg1"))))
|
||||
(build-system meson-build-system)
|
||||
(native-inputs `(("pkg-config" ,pkg-config)))
|
||||
(inputs `(("cairo" ,cairo)
|
||||
|
|
|
|||
|
|
@ -430,8 +430,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration."
|
|||
It has been modified to remove all non-free binary blobs.")
|
||||
(license license:gpl2)))
|
||||
|
||||
(define %linux-libre-version "5.1.7")
|
||||
(define %linux-libre-hash "0hr4sbapdpgdkb6xg1f7bpc31242yiqdvy5sfpymsrzfslr8vwy1")
|
||||
(define %linux-libre-version "5.1.8")
|
||||
(define %linux-libre-hash "1vkirlz9vsvym8fdbvj308n3hj8f9j8n9m267x0dhlgbmig570j2")
|
||||
|
||||
(define %linux-libre-5.1-patches
|
||||
(list %boot-logo-patch
|
||||
|
|
@ -448,8 +448,8 @@ It has been modified to remove all non-free binary blobs.")
|
|||
(make-linux-libre-headers %linux-libre-version
|
||||
%linux-libre-hash))
|
||||
|
||||
(define %linux-libre-4.19-version "4.19.48")
|
||||
(define %linux-libre-4.19-hash "04jwwzc9wbhx33i4bhm3vbs52vxlb8kjdmfjpfild94xbk8m2wy4")
|
||||
(define %linux-libre-4.19-version "4.19.49")
|
||||
(define %linux-libre-4.19-hash "0dxmm8190h0g5indj3sqfipkji10y3icr8xnf7bbz7086nkkrcvz")
|
||||
|
||||
(define %linux-libre-4.19-patches
|
||||
(list %boot-logo-patch
|
||||
|
|
@ -466,22 +466,8 @@ It has been modified to remove all non-free binary blobs.")
|
|||
(make-linux-libre-headers %linux-libre-4.19-version
|
||||
%linux-libre-4.19-hash))
|
||||
|
||||
(define %linux-libre-4.15-version "4.15.18")
|
||||
(define %linux-libre-4.15-hash "0f0s4drx888ydlwjcm9qcxqian4850yiv2vamyw9bbjf83frwxyw")
|
||||
|
||||
(define-public linux-libre-4.15
|
||||
(make-linux-libre %linux-libre-4.15-version
|
||||
%linux-libre-4.15-hash
|
||||
'("x86_64-linux" "i686-linux" "armhf-linux")
|
||||
#:configuration-file kernel-config))
|
||||
|
||||
(define-public linux-libre-headers-4.15
|
||||
(make-linux-libre-headers %linux-libre-4.15-version
|
||||
%linux-libre-4.15-hash))
|
||||
|
||||
|
||||
(define %linux-libre-4.14-version "4.14.123")
|
||||
(define %linux-libre-4.14-hash "185kf576rwhsaq7jqrnmg8r5fh2nh4k8lifxaxwi3amshnwbj2qg")
|
||||
(define %linux-libre-4.14-version "4.14.124")
|
||||
(define %linux-libre-4.14-hash "0z9iaz1rcm9472rjvcihmq65ygyks07j6kbiqm989r9rb4dw6ghg")
|
||||
|
||||
(define-public linux-libre-4.14
|
||||
(make-linux-libre %linux-libre-4.14-version
|
||||
|
|
@ -4405,15 +4391,16 @@ developers.")
|
|||
(define-public radeontop
|
||||
(package
|
||||
(name "radeontop")
|
||||
(version "1.1")
|
||||
(home-page "https://github.com/clbr/radeontop/")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append home-page "archive/v" version ".tar.gz"))
|
||||
(file-name (string-append name "-" version ".tar.gz"))
|
||||
(version "1.2")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/clbr/radeontop.git")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1fv06j5c99imvzkac3j40lgjhr5b2i77fnyffhlvj92bli1fm1c6"))))
|
||||
(base32 "1b1m30r2nfwqkajqw6m01xmfhlq83z1qylyijxg7962mp9x2k0gw"))))
|
||||
(build-system gnu-build-system)
|
||||
(arguments
|
||||
`(#:phases (modify-phases %standard-phases
|
||||
|
|
@ -4437,6 +4424,7 @@ developers.")
|
|||
("libpciaccess" ,libpciaccess)
|
||||
("libxcb" ,libxcb)
|
||||
("ncurses" ,ncurses)))
|
||||
(home-page "https://github.com/clbr/radeontop/")
|
||||
(synopsis "Usage monitor for AMD Radeon graphics")
|
||||
(description "RadeonTop monitors resource consumption on supported AMD
|
||||
Radeon Graphics Processing Units (GPUs), either in real time as bar graphs on
|
||||
|
|
|
|||
|
|
@ -581,7 +581,7 @@ and corrections. It is based on a Bayesian filter.")
|
|||
(define-public offlineimap
|
||||
(package
|
||||
(name "offlineimap")
|
||||
(version "7.2.3")
|
||||
(version "7.2.4")
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
|
|
@ -590,7 +590,7 @@ and corrections. It is based on a Bayesian filter.")
|
|||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"18sdnhjldn8zs03bgqy1qa3ikmlfvyxcvwp3nbnv1a74biccqbpa"))))
|
||||
"0h5q5nk2p2vx86w6rrbs7v70h81dpqqr68x6l3klzl3m0yj9agb1"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
`(("asciidoc" ,asciidoc)))
|
||||
|
|
|
|||
|
|
@ -0,0 +1,41 @@
|
|||
Fixes compilation with Mesa >= 18.2.5.
|
||||
|
||||
Taken from upstream:
|
||||
|
||||
https://github.com/liballeg/allegro5/commit/a40d30e21802ecf5c9382cf34af9b01bd3781e47
|
||||
|
||||
diff --git a/include/allegro5/allegro_opengl.h b/include/allegro5/allegro_opengl.h
|
||||
index 0f86a6768..652dd024e 100644
|
||||
--- a/include/allegro5/allegro_opengl.h
|
||||
+++ b/include/allegro5/allegro_opengl.h
|
||||
@@ -103,10 +103,14 @@
|
||||
|
||||
/* HACK: Prevent both Mesa and SGI's broken headers from screwing us */
|
||||
#define __glext_h_
|
||||
+#define __gl_glext_h_
|
||||
#define __glxext_h_
|
||||
+#define __glx_glxext_h_
|
||||
#include <GL/gl.h>
|
||||
#undef __glext_h_
|
||||
+#undef __gl_glext_h_
|
||||
#undef __glxext_h_
|
||||
+#undef __glx_glxext_h_
|
||||
|
||||
#endif /* ALLEGRO_MACOSX */
|
||||
|
||||
diff --git a/include/allegro5/opengl/GLext/glx_ext_defs.h b/include/allegro5/opengl/GLext/glx_ext_defs.h
|
||||
index 49c502091..fba8aea5d 100644
|
||||
--- a/include/allegro5/opengl/GLext/glx_ext_defs.h
|
||||
+++ b/include/allegro5/opengl/GLext/glx_ext_defs.h
|
||||
@@ -1,7 +1,9 @@
|
||||
/* HACK: Prevent both Mesa and SGI's broken headers from screwing us */
|
||||
#define __glxext_h_
|
||||
+#define __glx_glxext_h_
|
||||
#include <GL/glx.h>
|
||||
#undef __glxext_h_
|
||||
+#undef __glx_glxext_h_
|
||||
|
||||
#ifndef GLX_VERSION_1_3
|
||||
#define _ALLEGRO_GLX_VERSION_1_3
|
||||
--
|
||||
2.20.0
|
||||
|
|
@ -1404,13 +1404,13 @@ data derived from /etc/mime.types in UNIX-type systems.")
|
|||
(define-public r-markdown
|
||||
(package
|
||||
(name "r-markdown")
|
||||
(version "0.9")
|
||||
(version "1.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "markdown" version))
|
||||
(sha256
|
||||
(base32
|
||||
"08xzs4bcf12jxp0276m6xqvq8kcgg5qp6fxrvsz6r9x73jjccs1h"))))
|
||||
"19nrz0ba1yd5kicd65crkkz2r3kialm2hm6zdkp495l2s5r80b8p"))))
|
||||
(build-system r-build-system)
|
||||
;; Skip check phase because the tests require the r-knitr package to be
|
||||
;; installed. This prevents installation failures. Knitr normally
|
||||
|
|
@ -1670,14 +1670,14 @@ like tidy evaluation.")
|
|||
(define-public r-tibble
|
||||
(package
|
||||
(name "r-tibble")
|
||||
(version "2.1.2")
|
||||
(version "2.1.3")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "tibble" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1sb5j6k8hp7yf7grjjhn45hhc163fcndiw9zw976zc74f1856kpj"))))
|
||||
"06jfayiip8j8ibdhw3fvxn4n8aqbqhwanrszpzlsf92xdfgfm34s"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-cli" ,r-cli)
|
||||
|
|
@ -1731,14 +1731,14 @@ database.")
|
|||
(define-public r-dbplyr
|
||||
(package
|
||||
(name "r-dbplyr")
|
||||
(version "1.4.0")
|
||||
(version "1.4.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "dbplyr" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0f4gfkzl07gfwihyc747kdnzxahaw2g28wli4jmikrvczldvjqjx"))))
|
||||
"15fs66qq2p20gi3y2jlcsw27ach8rwkkkgr1mz2qbiyddbsjks6g"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-assertthat" ,r-assertthat)
|
||||
|
|
@ -2882,13 +2882,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
|
|||
(define-public r-xml
|
||||
(package
|
||||
(name "r-xml")
|
||||
(version "3.98-1.19")
|
||||
(version "3.98-1.20")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "XML" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1axyfa56q45x7z4zd56aasdn9hz9niv2vv5qm1zp9i94vyic9cc1"))))
|
||||
"0n28m8iz1wfgixr7fjswl238c5w9kggsrw0c8hdzp859dqvqdbs6"))))
|
||||
(properties
|
||||
`((upstream-name . "XML")))
|
||||
(build-system r-build-system)
|
||||
|
|
@ -3365,14 +3365,14 @@ Stochastic Neighbor Embedding using a Barnes-Hut implementation.")
|
|||
(define-public r-e1071
|
||||
(package
|
||||
(name "r-e1071")
|
||||
(version "1.7-1")
|
||||
(version "1.7-2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "e1071" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1zlxz3da216q6v6r4ff60il121xwz7g7m639vzdwglhw3jjh8psw"))))
|
||||
"0lipj692rjjw8rrhqh2k9i5dh8y2sjrw9q53rwm32irhx2f2j73j"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-class" ,r-class)))
|
||||
|
|
@ -4772,14 +4772,14 @@ and resampling-based inference.")
|
|||
(define-public r-prabclus
|
||||
(package
|
||||
(name "r-prabclus")
|
||||
(version "2.2-7.1")
|
||||
(version "2.3-1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "prabclus" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0x998nidd7abq5nqynyr8q79z056qbli23mvad6f09fjn2xz6nrc"))))
|
||||
"1h5k13w8mmmdy74l145zh64f339wy78z1nlg8xr3zg23gmv98cpg"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-mass" ,r-mass)
|
||||
|
|
@ -4968,14 +4968,14 @@ of the points.")
|
|||
(define-public r-fpc
|
||||
(package
|
||||
(name "r-fpc")
|
||||
(version "2.2-1")
|
||||
(version "2.2-2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "fpc" version))
|
||||
(sha256
|
||||
(base32
|
||||
"183awn9fbigsy3rwmg5l39zpfg2zpbb94hkx7k99v2dir8dpdy85"))))
|
||||
"1lzqxi2jzc753j4356b949isx2nccd32mw2ch665q78nxccp145n"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-class" ,r-class)
|
||||
|
|
@ -5139,14 +5139,14 @@ using modular prediction and response module classes.")
|
|||
(define-public r-quantreg
|
||||
(package
|
||||
(name "r-quantreg")
|
||||
(version "5.38")
|
||||
(version "5.40")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "quantreg" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1vvvnk291f0dccg04l3nsnk585gq75sk0b2vdbrqv3lczvv18nw1"))))
|
||||
"1srni6lkgvy44ljxndz2j9ca702z2wy81f6z6mbbi6h06ni11qw6"))))
|
||||
(build-system r-build-system)
|
||||
(native-inputs
|
||||
`(("gfortran" ,gfortran)))
|
||||
|
|
@ -5377,14 +5377,14 @@ are computed via non-Monte Carlo methods.")
|
|||
(define-public r-numderiv
|
||||
(package
|
||||
(name "r-numderiv")
|
||||
(version "2016.8-1")
|
||||
(version "2016.8-1.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (cran-uri "numDeriv" version))
|
||||
(sha256
|
||||
(base32
|
||||
"07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"))))
|
||||
"0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q"))))
|
||||
(properties `((upstream-name . "numDeriv")))
|
||||
(build-system r-build-system)
|
||||
(home-page "https://cran.r-project.org/web/packages/numDeriv")
|
||||
|
|
|
|||
|
|
@ -28,7 +28,7 @@
|
|||
(define-public tbb
|
||||
(package
|
||||
(name "tbb")
|
||||
(version "2019_U6")
|
||||
(version "2019_U8")
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
|
|
@ -37,7 +37,7 @@
|
|||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1zbf06l659vq6s5wp3ln96ycwcd42caffan5vilqvqyxqvjljyic"))
|
||||
"0z0kh1a5g28gckcxlv3x7qqskh5fsl8knf2ypbbvk7z9ln9k3wfq"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
'(begin
|
||||
|
|
|
|||
|
|
@ -924,7 +924,7 @@ tmux.")
|
|||
(define-public kitty
|
||||
(package
|
||||
(name "kitty")
|
||||
(version "0.14.1")
|
||||
(version "0.14.2")
|
||||
(home-page "https://sw.kovidgoyal.net/kitty/")
|
||||
(source
|
||||
(origin
|
||||
|
|
@ -935,7 +935,7 @@ tmux.")
|
|||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"0nm8l8ki0csdapf5mj3vg605ki5hjsx7h7i3m01x1a4vjzjmk8bv"))
|
||||
"15iv3k7iryf10n8n67d37x24pzcarq97a3dr42lbld00k1lx19az"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
'(begin
|
||||
|
|
|
|||
|
|
@ -310,7 +310,7 @@ integrate Windows applications into your desktop.")
|
|||
(define-public wine-staging-patchset-data
|
||||
(package
|
||||
(name "wine-staging-patchset-data")
|
||||
(version "4.9")
|
||||
(version "4.10")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -320,7 +320,7 @@ integrate Windows applications into your desktop.")
|
|||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"17v66rsxvm3grglidxxzllw4msfrgwg35hmzanvrf8x8jfzjlvv2"))))
|
||||
"0kl5718c4xk8d1va1jb5jaa2n0vw3l0hi6bpc7siaww1fp64hy98"))))
|
||||
(build-system trivial-build-system)
|
||||
(native-inputs
|
||||
`(("bash" ,bash)
|
||||
|
|
@ -366,7 +366,7 @@ integrate Windows applications into your desktop.")
|
|||
(file-name (string-append name "-" version ".tar.xz"))
|
||||
(sha256
|
||||
(base32
|
||||
"16vrzhhk0x862mfhninx5515s76j2kbjgmz7gzdigjzkzwi8x14i"))))
|
||||
"041d3km85iqbshspy9av1fxjwq18xldrb18j04xl2fmpv1hq3pas"))))
|
||||
(inputs `(("autoconf" ,autoconf) ; for autoreconf
|
||||
("faudio" ,faudio)
|
||||
("ffmpeg" ,ffmpeg)
|
||||
|
|
|
|||
|
|
@ -28,6 +28,7 @@
|
|||
#:use-module (guix store)
|
||||
#:use-module (guix deprecation)
|
||||
#:use-module (gnu services)
|
||||
#:use-module (gnu services admin)
|
||||
#:use-module (gnu services shepherd)
|
||||
#:use-module (gnu system pam)
|
||||
#:use-module (gnu system shadow) ; 'user-account', etc.
|
||||
|
|
@ -1824,7 +1825,8 @@ raise a deprecation warning if the 'compression-level' field was used."
|
|||
#:environment-variables
|
||||
(list (string-append "GUIX_LOCPATH="
|
||||
#$glibc-utf8-locales "/lib/locale")
|
||||
"LC_ALL=en_US.utf8")))
|
||||
"LC_ALL=en_US.utf8")
|
||||
#:log-file "/var/log/guix-publish.log"))
|
||||
(stop #~(make-kill-destructor))))))
|
||||
|
||||
(define %guix-publish-accounts
|
||||
|
|
@ -1837,6 +1839,10 @@ raise a deprecation warning if the 'compression-level' field was used."
|
|||
(home-directory "/var/empty")
|
||||
(shell (file-append shadow "/sbin/nologin")))))
|
||||
|
||||
(define %guix-publish-log-rotations
|
||||
(list (log-rotation
|
||||
(files (list "/var/log/guix-publish.log")))))
|
||||
|
||||
(define (guix-publish-activation config)
|
||||
(let ((cache (guix-publish-configuration-cache config)))
|
||||
(if cache
|
||||
|
|
@ -1858,6 +1864,8 @@ raise a deprecation warning if the 'compression-level' field was used."
|
|||
guix-publish-shepherd-service)
|
||||
(service-extension account-service-type
|
||||
(const %guix-publish-accounts))
|
||||
(service-extension rottlog-service-type
|
||||
(const %guix-publish-log-rotations))
|
||||
(service-extension activation-service-type
|
||||
guix-publish-activation)))
|
||||
(default-value (guix-publish-configuration))
|
||||
|
|
|
|||
|
|
@ -0,0 +1,112 @@
|
|||
;;; GNU Guix --- Functional package management for GNU
|
||||
;;; Copyright © 2019 Oleg Pykhalov <go.wigust@gmail.com>
|
||||
;;;
|
||||
;;; This file is part of GNU Guix.
|
||||
;;;
|
||||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||||
;;; under the terms of the GNU General Public License as published by
|
||||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||||
;;; your option) any later version.
|
||||
;;;
|
||||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
;;; GNU General Public License for more details.
|
||||
;;;
|
||||
;;; You should have received a copy of the GNU General Public License
|
||||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||||
|
||||
(define-module (gnu services nix)
|
||||
#:use-module (gnu packages admin)
|
||||
#:use-module (gnu packages package-management)
|
||||
#:use-module (gnu services base)
|
||||
#:use-module (gnu services configuration)
|
||||
#:use-module (gnu services shepherd)
|
||||
#:use-module (gnu services web)
|
||||
#:use-module (gnu services)
|
||||
#:use-module (gnu system shadow)
|
||||
#:use-module (guix gexp)
|
||||
#:use-module (guix packages)
|
||||
#:use-module (guix records)
|
||||
#:use-module (guix store)
|
||||
#:use-module (srfi srfi-1)
|
||||
#:use-module (srfi srfi-26)
|
||||
#:export (nix-service-type))
|
||||
|
||||
;;; Commentary:
|
||||
;;;
|
||||
;;; This module provides a service definition for the Nix daemon.
|
||||
;;;
|
||||
;;; Code:
|
||||
|
||||
|
||||
;;;
|
||||
;;; Accounts
|
||||
;;;
|
||||
|
||||
;; Copied from gnu/services/base.scm
|
||||
(define* (nix-build-accounts count #:key
|
||||
(group "nixbld")
|
||||
(shadow shadow))
|
||||
"Return a list of COUNT user accounts for Nix build users with the given
|
||||
GID."
|
||||
(unfold (cut > <> count)
|
||||
(lambda (n)
|
||||
(user-account
|
||||
(name (format #f "nixbld~2,'0d" n))
|
||||
(system? #t)
|
||||
(group group)
|
||||
(supplementary-groups (list group "kvm"))
|
||||
(comment (format #f "Nix Build User ~2d" n))
|
||||
(home-directory "/var/empty")
|
||||
(shell (file-append shadow "/sbin/nologin"))))
|
||||
1+
|
||||
1))
|
||||
(define (nix-accounts _)
|
||||
"Return the user accounts and user groups."
|
||||
(cons (user-group
|
||||
(name "nixbld")
|
||||
(system? #t)
|
||||
|
||||
;; Use a fixed GID so that we can create the store with the right
|
||||
;; owner.
|
||||
(id 40000))
|
||||
(nix-build-accounts 10 #:group "nixbld")))
|
||||
|
||||
(define (nix-activation _)
|
||||
"Return the activation gexp."
|
||||
(with-imported-modules '((guix build utils))
|
||||
#~(begin
|
||||
(use-modules (guix build utils))
|
||||
(for-each (cut mkdir-p <>) '("/nix/store" "/nix/var/log"
|
||||
"/nix/var/nix/gcroots/per-user"
|
||||
"/nix/var/nix/profiles/per-user"))
|
||||
(chown "/nix/store"
|
||||
(passwd:uid (getpw "root")) (group:gid (getpw "nixbld01")))
|
||||
(chmod "/nix/store" #o775)
|
||||
(for-each (cut chmod <> #o777) '("/nix/var/nix/profiles"
|
||||
"/nix/var/nix/profiles/per-user")))))
|
||||
|
||||
(define (nix-shepherd-service _)
|
||||
"Return a <shepherd-service> for Nix."
|
||||
(list
|
||||
(shepherd-service
|
||||
(provision '(nix-daemon))
|
||||
(documentation "Run nix-daemon.")
|
||||
(requirement '())
|
||||
(start #~(make-forkexec-constructor
|
||||
(list (string-append #$nix "/bin/nix-daemon"))))
|
||||
(respawn? #f)
|
||||
(stop #~(make-kill-destructor)))))
|
||||
|
||||
(define nix-service-type
|
||||
(service-type
|
||||
(name 'nix)
|
||||
(extensions
|
||||
(list (service-extension shepherd-root-service-type nix-shepherd-service)
|
||||
(service-extension account-service-type nix-accounts)
|
||||
(service-extension activation-service-type nix-activation)))
|
||||
(default-value '())
|
||||
(description "Run the Nix daemon.")))
|
||||
|
||||
;;; nix.scm ends here
|
||||
|
|
@ -465,7 +465,7 @@ desktop session from the system or user profile will be used."
|
|||
(define %default-slim-theme-name
|
||||
;; This must be the name of the sub-directory in %DEFAULT-SLIM-THEME that
|
||||
;; contains the actual theme files.
|
||||
"0.x")
|
||||
"1.x")
|
||||
|
||||
(define-record-type* <slim-configuration>
|
||||
slim-configuration make-slim-configuration
|
||||
|
|
|
|||
|
|
@ -982,12 +982,17 @@ recursively."
|
|||
|
||||
(define* (build-derivations store derivations
|
||||
#:optional (mode (build-mode normal)))
|
||||
"Build DERIVATIONS, a list of <derivation> objects or .drv file names, using
|
||||
the specified MODE."
|
||||
"Build DERIVATIONS, a list of <derivation> objects, .drv file names, or
|
||||
derivation/output pairs, using the specified MODE."
|
||||
(build-things store (map (match-lambda
|
||||
((? derivation? drv)
|
||||
(derivation-file-name drv))
|
||||
((? string? file) file)
|
||||
((and drv ($ <derivation>))
|
||||
(derivation-file-name drv)))
|
||||
(((? derivation? drv) . output)
|
||||
(cons (derivation-file-name drv)
|
||||
output))
|
||||
(((? string? file) . output)
|
||||
(cons file output)))
|
||||
derivations)
|
||||
mode))
|
||||
|
||||
|
|
|
|||
|
|
@ -393,8 +393,8 @@
|
|||
(module-autoload! (current-module)
|
||||
'(guix base16) '(bytevector->base16-string))
|
||||
|
||||
(list (guix-publish "mirror.hydra.gnu.org")
|
||||
(guix-publish "berlin.guixsd.org")
|
||||
(list (guix-publish "ci.guix.gnu.org")
|
||||
(guix-publish "mirror.hydra.gnu.org")
|
||||
(lambda (file algo hash)
|
||||
;; 'tarballs.nixos.org' supports several algorithms.
|
||||
(string-append "https://tarballs.nixos.org/"
|
||||
|
|
|
|||
|
|
@ -621,9 +621,9 @@ releases are on gnu.org."
|
|||
(false-if-ftp-error
|
||||
(latest-ftp-release
|
||||
(package-upstream-name package)
|
||||
#:server "mirrors.mit.edu"
|
||||
#:directory
|
||||
(string-append "/kde" (dirname (dirname (uri-path uri))))))))
|
||||
#:server "ftp.mirrorservice.org"
|
||||
#:directory (string-append "/sites/ftp.kde.org/pub/kde/"
|
||||
(dirname (dirname (uri-path uri))))))))
|
||||
|
||||
(define (latest-xorg-release package)
|
||||
"Return the latest release of PACKAGE, the name of an X.org package."
|
||||
|
|
|
|||
|
|
@ -455,8 +455,9 @@ the image."
|
|||
#$profile
|
||||
#:database #+database
|
||||
#:system (or #$target (utsname:machine (uname)))
|
||||
#:entry-point (string-append #$profile "/"
|
||||
#$entry-point)
|
||||
#:entry-point #$(and entry-point
|
||||
#~(string-append #$profile "/"
|
||||
#$entry-point))
|
||||
#:symlinks '#$symlinks
|
||||
#:compressor '#$(compressor-command compressor)
|
||||
#:creation-time (make-time time-utc 0 1))))))
|
||||
|
|
|
|||
|
|
@ -33,6 +33,7 @@
|
|||
#:use-module (srfi srfi-34)
|
||||
#:use-module (srfi srfi-35)
|
||||
#:use-module (ice-9 match)
|
||||
#:use-module (ice-9 format)
|
||||
#:use-module (ice-9 binary-ports)
|
||||
#:export (open-ssh-session
|
||||
remote-inferior
|
||||
|
|
|
|||
|
|
@ -1211,7 +1211,13 @@ an arbitrary directory layout in the store without creating a derivation."
|
|||
"Build THINGS, a list of store items which may be either '.drv' files or
|
||||
outputs, and return when the worker is done building them. Elements of THINGS
|
||||
that are not derivations can only be substituted and not built locally.
|
||||
Return #t on success."
|
||||
Alternately, an element of THING can be a derivation/output name pair, in
|
||||
which case the daemon will attempt to substitute just the requested output of
|
||||
the derivation. Return #t on success."
|
||||
(let ((things (map (match-lambda
|
||||
((drv . output) (string-append drv "!" output))
|
||||
(thing thing))
|
||||
things)))
|
||||
(parameterize ((current-store-protocol-version
|
||||
(store-connection-version store)))
|
||||
(if (>= (store-connection-minor-version store) 15)
|
||||
|
|
@ -1220,7 +1226,7 @@ Return #t on success."
|
|||
(build/old store things)
|
||||
(raise (condition (&store-protocol-error
|
||||
(message "unsupported build mode")
|
||||
(status 1))))))))))
|
||||
(status 1)))))))))))
|
||||
|
||||
(define-operation (add-temp-root (store-path path))
|
||||
"Make PATH a temporary root for the duration of the current session.
|
||||
|
|
|
|||
18447
po/doc/guix-manual.de.po
18447
po/doc/guix-manual.de.po
File diff suppressed because it is too large
Load Diff
|
|
@ -787,6 +787,28 @@
|
|||
(build-derivations store (list drv))
|
||||
#f)))
|
||||
|
||||
(test-assert "build-derivations with specific output"
|
||||
(with-store store
|
||||
(let* ((content (random-text)) ;contents of the output
|
||||
(drv (build-expression->derivation
|
||||
store "substitute-me"
|
||||
`(begin ,content (exit 1)) ;would fail
|
||||
#:outputs '("out" "one" "two")
|
||||
#:guile-for-build
|
||||
(package-derivation store %bootstrap-guile)))
|
||||
(out (derivation->output-path drv)))
|
||||
(with-derivation-substitute drv content
|
||||
(set-build-options store #:use-substitutes? #t
|
||||
#:substitute-urls (%test-substitute-urls))
|
||||
(and (has-substitutes? store out)
|
||||
|
||||
;; Ask for nothing but the "out" output of DRV.
|
||||
(build-derivations store `((,drv . "out")))
|
||||
|
||||
(valid-path? store out)
|
||||
(equal? (pk 'x content) (pk 'y (call-with-input-file out get-string-all)))
|
||||
)))))
|
||||
|
||||
(test-assert "build-expression->derivation and derivation-prerequisites-to-build"
|
||||
(let ((drv (build-expression->derivation %store "fail" #f)))
|
||||
;; The only direct dependency is (%guile-for-build) and it's already
|
||||
|
|
|
|||
|
|
@ -599,6 +599,26 @@
|
|||
(valid-path? s o)
|
||||
(equal? c (call-with-input-file o get-string-all)))))))
|
||||
|
||||
(test-assert "substitute + build-things with specific output"
|
||||
(with-store s
|
||||
(let* ((c (random-text)) ;contents of the output
|
||||
(d (build-expression->derivation
|
||||
s "substitute-me" `(begin ,c (exit 1)) ;would fail
|
||||
#:outputs '("out" "one" "two")
|
||||
#:guile-for-build
|
||||
(package-derivation s %bootstrap-guile (%current-system))))
|
||||
(o (derivation->output-path d)))
|
||||
(with-derivation-substitute d c
|
||||
(set-build-options s #:use-substitutes? #t
|
||||
#:substitute-urls (%test-substitute-urls))
|
||||
(and (has-substitutes? s o)
|
||||
|
||||
;; Ask for nothing but the "out" output of D.
|
||||
(build-things s `((,(derivation-file-name d) . "out")))
|
||||
|
||||
(valid-path? s o)
|
||||
(equal? c (call-with-input-file o get-string-all)))))))
|
||||
|
||||
(test-assert "substitute, corrupt output hash"
|
||||
;; Tweak the substituter into installing a substitute whose hash doesn't
|
||||
;; match the one announced in the narinfo. The daemon must notice this and
|
||||
|
|
|
|||
Loading…
Reference in New Issue