gnu: Add r-quantro.
* gnu/packages/bioconductor.scm (r-quantro): New variable.
This commit is contained in:
parent
8d1990d495
commit
59cf26292f
|
@ -3848,3 +3848,34 @@ generating high resolution journal figures.")
|
|||
GeneChip expression data and reproducibility analysis of human whole genome
|
||||
chips with the MAQC reference datasets.")
|
||||
(license license:artistic2.0)))
|
||||
|
||||
(define-public r-quantro
|
||||
(package
|
||||
(name "r-quantro")
|
||||
(version "1.16.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "quantro" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"))))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-biobase" ,r-biobase)
|
||||
("r-doparallel" ,r-doparallel)
|
||||
("r-foreach" ,r-foreach)
|
||||
("r-ggplot2" ,r-ggplot2)
|
||||
("r-iterators" ,r-iterators)
|
||||
("r-minfi" ,r-minfi)
|
||||
("r-rcolorbrewer" ,r-rcolorbrewer)))
|
||||
(home-page "https://bioconductor.org/packages/quantro/")
|
||||
(synopsis "Test for when to use quantile normalization")
|
||||
(description
|
||||
"This package provides a data-driven test for the assumptions of quantile
|
||||
normalization using raw data such as objects that inherit eSets (e.g.
|
||||
ExpressionSet, MethylSet). Group level information about each sample (such as
|
||||
Tumor / Normal status) must also be provided because the test assesses if
|
||||
there are global differences in the distributions between the user-defined
|
||||
groups.")
|
||||
(license license:gpl3+)))
|
||||
|
|
Loading…
Reference in New Issue