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gnu: samtools: Install headers. 

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-headers" to install header files.
This commit is contained in:
Ricardo Wurmus 2015-07-02 15:53:47 +02:00
parent 80ea7526db
commit 5bdda30b32
1 changed files with 16 additions and 1 deletions
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17
gnu/packages/bioinformatics.scm
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@ -1774,6 +1774,10 @@ distribution, coverage uniformity, strand specificity, etc.")
;; systems. ;; systems.
#:tests? ,(string=? (or (%current-system) (%current-target-system)) #:tests? ,(string=? (or (%current-system) (%current-target-system))
"x86_64-linux") "x86_64-linux")
#:modules ((ice-9 ftw)
(ice-9 regex)
(guix build gnu-build-system)
(guix build utils))
#:make-flags (list "LIBCURSES=-lncurses" #:make-flags (list "LIBCURSES=-lncurses"
(string-append "prefix=" (assoc-ref %outputs "out"))) (string-append "prefix=" (assoc-ref %outputs "out")))
#:phases #:phases
@ -1798,7 +1802,18 @@ distribution, coverage uniformity, strand specificity, etc.")
(let ((lib (string-append (assoc-ref outputs "out") "/lib"))) (let ((lib (string-append (assoc-ref outputs "out") "/lib")))
(mkdir-p lib) (mkdir-p lib)
(copy-file "libbam.a" (string-append lib "/libbam.a")))) (copy-file "libbam.a" (string-append lib "/libbam.a"))))
(alist-delete 'configure %standard-phases))))) (alist-cons-after
'install 'install-headers
(lambda* (#:key outputs #:allow-other-keys)
(let ((include (string-append (assoc-ref outputs "out")
"/include/samtools/")))
(mkdir-p include)
(for-each (lambda (file)
(copy-file file (string-append include
(basename file))))
(scandir "." (lambda (name) (string-match "\\.h$" name))))
#t))
(alist-delete 'configure %standard-phases))))))
(native-inputs `(("pkg-config" ,pkg-config))) (native-inputs `(("pkg-config" ,pkg-config)))
(inputs `(("ncurses" ,ncurses) (inputs `(("ncurses" ,ncurses)
("perl" ,perl) ("perl" ,perl)