gnu: Add python-pygenometracks.
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
This commit is contained in:
parent
1189c7f1b0
commit
5bfa7510d1
|
@ -13668,3 +13668,34 @@ the visualization of multiple contact matrices along with other types of data
|
||||||
like genes, compartments, ChIP-seq coverage tracks (and in general any type of
|
like genes, compartments, ChIP-seq coverage tracks (and in general any type of
|
||||||
genomic scores), long range contacts and the visualization of viewpoints.")
|
genomic scores), long range contacts and the visualization of viewpoints.")
|
||||||
(license license:gpl3)))
|
(license license:gpl3)))
|
||||||
|
|
||||||
|
(define-public python-pygenometracks
|
||||||
|
(package
|
||||||
|
(name "python-pygenometracks")
|
||||||
|
(version "2.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (pypi-uri "pyGenomeTracks" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
|
||||||
|
(build-system python-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("python-configparser" ,python-configparser)
|
||||||
|
("python-future" ,python-future)
|
||||||
|
("python-hicexplorer" ,python-hicexplorer)
|
||||||
|
("python-intervaltree" ,python-intervaltree)
|
||||||
|
("python-matplotlib" ,python-matplotlib)
|
||||||
|
("python-numpy" ,python-numpy)
|
||||||
|
("python-pybigwig" ,python-pybigwig)))
|
||||||
|
(native-inputs
|
||||||
|
`(("python-pytest" ,python-pytest)))
|
||||||
|
(home-page "https://pygenometracks.readthedocs.io")
|
||||||
|
(synopsis "Program and library to plot beautiful genome browser tracks")
|
||||||
|
(description
|
||||||
|
"This package aims to produce high-quality genome browser tracks that
|
||||||
|
are highly customizable. Currently, it is possible to plot: bigwig, bed (many
|
||||||
|
options), bedgraph, links (represented as arcs), and Hi-C matrices.
|
||||||
|
pyGenomeTracks can make plots with or without Hi-C data.")
|
||||||
|
(license license:gpl3+)))
|
||||||
|
|
Loading…
Reference in New Issue