gnu: Add python-pygenometracks.

* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
This commit is contained in:
Ricardo Wurmus 2018-09-05 16:07:28 +02:00 committed by Ricardo Wurmus
parent 1189c7f1b0
commit 5bfa7510d1
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 31 additions and 0 deletions

View File

@ -13668,3 +13668,34 @@ the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of
genomic scores), long range contacts and the visualization of viewpoints.")
(license license:gpl3)))
(define-public python-pygenometracks
(package
(name "python-pygenometracks")
(version "2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyGenomeTracks" version))
(sha256
(base32
"1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
(build-system python-build-system)
(propagated-inputs
`(("python-configparser" ,python-configparser)
("python-future" ,python-future)
("python-hicexplorer" ,python-hicexplorer)
("python-intervaltree" ,python-intervaltree)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
("python-pybigwig" ,python-pybigwig)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://pygenometracks.readthedocs.io")
(synopsis "Program and library to plot beautiful genome browser tracks")
(description
"This package aims to produce high-quality genome browser tracks that
are highly customizable. Currently, it is possible to plot: bigwig, bed (many
options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))