gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)

This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.

gnu/packages/bioinformatics.scm

@@ -680,15 +680,10 @@ bioinformatics programs; a standard sequence class and tools for performing
 common operations on them; code to perform data classification; code for
 dealing with alignments; code making it easy to split up parallelizable tasks
 into separate processes; and more.")
-    (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))
-    (properties `((python2-variant . ,(delay python2-biopython))))))
+    (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))))
 
 (define-public python2-biopython
-  (let ((base (package-with-python2 (strip-python2-variant python-biopython))))
-    (package
-      (inherit base)
-      (native-inputs `(("python2-setuptools" ,python2-setuptools)
-                       ,@(package-native-inputs base))))))
+  (package-with-python2 python-biopython))
 
 ;; An outdated version of biopython is required for seqmagick, see
 ;; https://github.com/fhcrc/seqmagick/issues/59
@@ -1427,7 +1422,6 @@ also includes an interface for tabix.")
               (sha256
                (base32
                 "1q8wnj2kga9nz1lwc4w7qv52smfm536hp6mc8w6s53lhyj0mpi22"))))
-    (properties `((python2-variant . ,(delay python2-twobitreader))))
     (build-system python-build-system)
     (arguments
      '(;; Tests are not distributed in the PyPi release.
@@ -1444,11 +1438,7 @@ UCSC genome browser.")
     (license license:artistic2.0)))
 
 (define-public python2-twobitreader
-  (let ((base (package-with-python2 (strip-python2-variant python-twobitreader))))
-    (package
-      (inherit base)
-      (native-inputs `(("python2-setuptools" ,python2-setuptools)
-                       ,@(package-native-inputs base))))))
+  (package-with-python2 python-twobitreader))
 
 (define-public python-plastid
   (package
@@ -1460,7 +1450,6 @@ UCSC genome browser.")
               (sha256
                (base32
                 "1sqkz5d3b9kf688mp7k771c87ins42j7j0whmkb49cb3fsg8s8lj"))))
-    (properties `((python2-variant . ,(delay python2-plastid))))
     (build-system python-build-system)
     (arguments
      ;; Some test files are not included.
@@ -1485,12 +1474,7 @@ high-throughput sequencing data – with an emphasis on simplicity.")
     (license license:bsd-3)))
 
 (define-public python2-plastid
-  (let ((base (package-with-python2 (strip-python2-variant python-plastid))))
-    (package
-      (inherit base)
-      ;; setuptools is required at runtime
-      (propagated-inputs `(("python2-setuptools" ,python2-setuptools)
-                           ,@(package-propagated-inputs base))))))
+  (package-with-python2 python-plastid))
 
 (define-public cd-hit
   (package
@@ -1939,10 +1923,7 @@ accessing bigWig files.")
     (license license:expat)))
 
 (define-public python2-pybigwig
-  (let ((pybigwig (package-with-python2 python-pybigwig)))
-    (package (inherit pybigwig)
-      (native-inputs
-       `(("python-setuptools" ,python2-setuptools))))))
+  (package-with-python2 python-pybigwig))
 
 (define-public python-dendropy
   (package
@@ -4568,11 +4549,7 @@ sequence itself can be retrieved from these databases.")
     (license license:bsd-3)))
 
 (define-public python2-screed
-  (let ((base (package-with-python2 (strip-python2-variant python-screed))))
-    (package
-      (inherit base)
-      (native-inputs `(("python2-setuptools" ,python2-setuptools)
-                       ,@(package-native-inputs base))))))
+  (package-with-python2 python-screed))
 
 (define-public sra-tools
   (package

gnu/packages/django.scm

@@ -148,16 +148,10 @@ with arguments to the field constructor.")
     (synopsis "Django plugin for py.test")
     (description "Pytest-django is a plugin for py.test that provides a set of
 useful tools for testing Django applications and projects.")
-    (properties `((python2-variant . ,(delay python2-pytest-django))))
     (license license:bsd-3)))
 
 (define-public python2-pytest-django
-  (let ((base (package-with-python2
-                (strip-python2-variant python-pytest-django))))
-    (package (inherit base)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs base))))))
+  (package-with-python2 python-pytest-django))
 
 (define-public python-django-filter
   (package
@@ -180,13 +174,7 @@ useful tools for testing Django applications and projects.")
 some of the more mundane bits of view code.  Specifically, it allows users to
 filter down a queryset based on a model’s fields, displaying the form to let
 them do this.")
-    (properties `((python2-variant . ,(delay python2-django-filter))))
     (license license:bsd-3)))
 
 (define-public python2-django-filter
-  (let ((base (package-with-python2
-                (strip-python2-variant python-django-filter))))
-    (package (inherit base)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs base))))))
+  (package-with-python2 python-django-filter))

gnu/packages/gnupg.scm

@@ -417,12 +417,7 @@ decrypt messages using the OpenPGP format by making use of GPGME.")
     (license license:lgpl2.1+)))
 
 (define-public python2-pygpgme
-  (let ((base (package-with-python2 python-pygpgme)))
-    (package
-      (inherit base)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs base))))))
+  (package-with-python2 python-pygpgme))
 
 (define-public python-gnupg
   (package

gnu/packages/mail.scm

@@ -1741,12 +1741,7 @@ for OpenSMTPD to extend its functionality.")
     (description
      "The mailmanclient library provides official Python bindings for
 the GNU Mailman 3 REST API.")
-    (properties `((python2-variant . ,(delay python2-mailmanclient))))
     (license lgpl3+)))
 
 (define-public python2-mailmanclient
-  (let ((base (package-with-python2
-               (strip-python2-variant python-mailmanclient))))
-    (package (inherit base)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools))))))
+  (package-with-python2 python-mailmanclient))

gnu/packages/mpd.scm

@@ -257,15 +257,10 @@ information about tracks being played to a scrobbler, such as Libre.FM.")
     (synopsis "Python MPD client library")
     (description "Python-mpd2 is a Python library which provides a client
 interface for the Music Player Daemon.")
-    (license license:lgpl3+)
-    (properties `((python2-variant . ,(delay python2-mpd2))))))
+    (license license:lgpl3+)))
 
 (define-public python2-mpd2
-  (let ((mpd2 (package-with-python2
-               (strip-python2-variant python-mpd2))))
-    (package (inherit mpd2)
-      (native-inputs `(("python2-setuptools" ,python2-setuptools)
-                       ,@(package-native-inputs mpd2))))))
+  (package-with-python2 python-mpd2))
 
 (define-public sonata
   (package

gnu/packages/music.scm

@@ -1829,16 +1829,10 @@ detailed track info including timbre, pitch, rhythm and loudness information.
     (synopsis "Python interface to Last.fm and Libre.fm")
     (description "A Python interface to Last.fm and other API-compatible
 websites such as Libre.fm.")
-    (license license:asl2.0)
-    (properties `((python2-variant . ,(delay python2-pylast))))))
+    (license license:asl2.0)))
 
 (define-public python2-pylast
-  (let ((pylast (package-with-python2
-                 (strip-python2-variant python-pylast))))
-    (package (inherit pylast)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs pylast))))))
+  (package-with-python2 python-pylast))
 
 (define-public beets
   (package

gnu/packages/openstack.scm

@@ -261,16 +261,10 @@ tested on Python version 3.2, 2.7 and 2.6.")
     (description
       "This module provides a building block to stub out the HTTP requests
 portions of your testing code.")
-    (license asl2.0)
-    (properties `((python2-variant . ,(delay python2-requests-mock))))))
+    (license asl2.0)))
 
 (define-public python2-requests-mock
-  (let ((base (package-with-python2
-                (strip-python2-variant python-requests-mock))))
-    (package (inherit base)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs base))))))
+  (package-with-python2 python-requests-mock))
 
 (define-public python-stevedore
   (package
@@ -808,8 +802,4 @@ Gerrit for review, or fetching existing ones.")
     (license asl2.0)))
 
 (define-public python2-git-review
-  (let ((base (package-with-python2 (strip-python2-variant python-git-review))))
-    (package (inherit base)
-             (native-inputs
-              `(("python2-setuptools" ,python2-setuptools)
-                ,@(package-native-inputs base))))))
+  (package-with-python2 python-git-review))

gnu/packages/password-utils.scm

@@ -375,8 +375,4 @@ Password Scheme\"} by Niels Provos and David Mazieres.")
     (license license:asl2.0)))
 
 (define-public python2-bcrypt
-  (let ((bcrypt (package-with-python2 python-bcrypt)))
-    (package (inherit bcrypt)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs bcrypt))))))
+  (package-with-python2 python-bcrypt))

gnu/packages/protobuf.scm

@@ -70,10 +70,7 @@ internal RPC protocols and file formats.")
     (description
      "Protocol buffers are a language-neutral, platform-neutral extensible
 mechanism for serializing structured data.")
-    (license bsd-3)
-    (properties `((python2-variant . ,(delay python2-protobuf))))))
+    (license bsd-3)))
 
 (define-public python2-protobuf
-  (package (inherit (package-with-python2
-                     (strip-python2-variant python-protobuf)))
-           (native-inputs `(("python2-setuptools" ,python2-setuptools)))))
+  (package-with-python2 python-protobuf))

gnu/packages/statistics.scm

@@ -1416,15 +1416,10 @@ building design matrices.")
     ;; The majority of the code is distributed under BSD-2.  The module
     ;; patsy.compat contains code derived from the Python standard library,
     ;; and is covered by the PSFL.
-    (license (list license:bsd-2 license:psfl))
-    (properties `((python2-variant . ,(delay python2-patsy))))))
+    (license (list license:bsd-2 license:psfl))))
 
 (define-public python2-patsy
-  (let ((patsy (package-with-python2 (strip-python2-variant python-patsy))))
-    (package (inherit patsy)
-      (native-inputs
-       `(("python2-setuptools" ,python2-setuptools)
-         ,@(package-native-inputs patsy))))))
+  (package-with-python2 python-patsy))
 
 (define-public python-statsmodels
   (package

gnu/packages/web.scm

@@ -3172,11 +3172,7 @@ CDF, Atom 0.3, and Atom 1.0 feeds.")
                    l:freebsd-doc)))) ; documentation
 
 (define-public python2-feedparser
-  (let ((base (package-with-python2
-               (strip-python2-variant python-feedparser))))
-    (package (inherit base)
-             (native-inputs
-              `(("python2-setuptools" ,python2-setuptools))))))
+  (package-with-python2 python-feedparser))
 
 (define-public r-httpuv
   (package