gnu: Add r-quasr.
* gnu/packages/bioconductor.scm (r-quasr): New variable.
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@ -4462,3 +4462,48 @@ aligner by Kim et al. (2015). The package contains wrapper functions to
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create a genome index and to perform the read alignment to the generated
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create a genome index and to perform the read alignment to the generated
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index.")
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index.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-quasr
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(package
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(name "r-quasr")
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(version "1.24.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "QuasR" version))
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(sha256
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(base32
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"02mdg3mq99gsqq181j3sfh9pid5l7dqjl68rk4fpc1rvm128y743"))))
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(properties `((upstream-name . "QuasR")))
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(build-system r-build-system)
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(inputs
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`(("zlib" ,zlib)))
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocmanager" ,r-biocmanager)
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("r-biocparallel" ,r-biocparallel)
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("r-biostrings" ,r-biostrings)
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("r-bsgenome" ,r-bsgenome)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicfiles" ,r-genomicfiles)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rbowtie" ,r-rbowtie)
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("r-rhisat2" ,r-rhisat2)
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("r-rhtslib" ,r-rhtslib)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-shortread" ,r-shortread)))
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(home-page "https://bioconductor.org/packages/QuasR/")
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(synopsis "Quantify and annotate short reads in R")
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(description
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"This package provides a framework for the quantification and analysis of
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short genomic reads. It covers a complete workflow starting from raw sequence
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reads, over creation of alignments and quality control plots, to the
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quantification of genomic regions of interest.")
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(license license:gpl2)))
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