gnu: Add r-methylumi.
* gnu/packages/bioconductor.scm (r-methylumi): New variable.master
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@ -2315,3 +2315,47 @@ studies.")
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"This package provides tools to analyze and visualize Illumina Infinium
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"This package provides tools to analyze and visualize Illumina Infinium
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methylation arrays.")
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methylation arrays.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-methylumi
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(package
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(name "r-methylumi")
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(version "2.28.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "methylumi" version))
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(sha256
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(base32
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"14p2qi18cprfvb2gxng1vm48c7zwh23h88q9qjgipj9xl5axsgw2"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotate" ,r-annotate)
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("r-annotationdbi" ,r-annotationdbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-fdb-infiniummethylation-hg19" ,r-fdb-infiniummethylation-hg19)
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("r-genefilter" ,r-genefilter)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-illuminaio" ,r-illuminaio)
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("r-iranges" ,r-iranges)
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("r-lattice" ,r-lattice)
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("r-matrixstats" ,r-matrixstats)
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("r-minfi" ,r-minfi)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(home-page "https://bioconductor.org/packages/methylumi")
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(synopsis "Handle Illumina methylation data")
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(description
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"This package provides classes for holding and manipulating Illumina
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methylation data. Based on eSet, it can contain MIAME information, sample
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information, feature information, and multiple matrices of data. An
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\"intelligent\" import function, methylumiR can read the Illumina text files
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and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files from
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HumanMethylation27 and HumanMethylation450 microarrays. Normalization,
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background correction, and quality control features for GoldenGate, Infinium,
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and Infinium HD arrays are also included.")
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(license license:gpl2)))
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