gnu: Add raxml.
* gnu/packages/bioinformatics.scm (raxml): New variable.
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@ -3380,6 +3380,46 @@ format. It runs quickly, in an unsupervised fashion, handles gaps, handles
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partial genes, and identifies translation initiation sites.")
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partial genes, and identifies translation initiation sites.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public raxml
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(package
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(name "raxml")
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(version "8.2.9")
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(source
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(origin
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(method url-fetch)
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(uri
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(string-append
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"https://github.com/stamatak/standard-RAxML/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"1pv8p2fy67y21a9y4cm7xpvxqjwz2v4201flfjshdq1p8j52rqf7"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; There are no tests.
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;; Use 'standard' Makefile rather than SSE or AVX ones.
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#:make-flags (list "-f" "Makefile.HYBRID.gcc")
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(executable "raxmlHPC-HYBRID"))
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(install-file executable bin)
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(symlink (string-append bin "/" executable) "raxml"))
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#t)))))
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(inputs
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`(("openmpi" ,openmpi)))
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(home-page "http://sco.h-its.org/exelixis/web/software/raxml/index.html")
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(synopsis "Randomized Axelerated Maximum Likelihood phylogenetic trees")
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(description
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"RAxML is a tool for phylogenetic analysis and post-analysis of large
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phylogenies.")
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(license license:gpl2+)))
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(define-public rsem
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(define-public rsem
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(package
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(package
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(name "rsem")
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(name "rsem")
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