gnu: Add r-chipcomp.
* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
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@ -502,3 +502,37 @@ data, such as that derived from next-generation sequencing machines,
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calculating estimated posterior likelihoods of differential expression (or
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calculating estimated posterior likelihoods of differential expression (or
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more complex hypotheses) via empirical Bayesian methods.")
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more complex hypotheses) via empirical Bayesian methods.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-chipcomp
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(package
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(name "r-chipcomp")
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(version "1.10.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ChIPComp" version))
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(sha256
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(base32
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"0j9nif7z33qdxf347r9wa62hhz8qs09r2p96x3hg5yz30a10ahqs"))))
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(properties `((upstream-name . "ChIPComp")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
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("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-limma" ,r-limma)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/ChIPComp")
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(synopsis "Quantitative comparison of multiple ChIP-seq datasets")
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(description
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"ChIPComp implements a statistical method for quantitative comparison of
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multiple ChIP-seq datasets. It detects differentially bound sharp binding
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sites across multiple conditions considering matching control in ChIP-seq
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datasets.")
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;; Any version of the GPL.
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(license license:gpl3+)))
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