gnu: Add r-chipcomp.

* gnu/packages/bioconductor.scm (r-chipcomp): New variable.
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Ricardo Wurmus 2018-06-15 07:36:15 +02:00
parent 2bece692a6
commit 609f4ad12f
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@ -502,3 +502,37 @@ data, such as that derived from next-generation sequencing machines,
calculating estimated posterior likelihoods of differential expression (or calculating estimated posterior likelihoods of differential expression (or
more complex hypotheses) via empirical Bayesian methods.") more complex hypotheses) via empirical Bayesian methods.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-chipcomp
(package
(name "r-chipcomp")
(version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ChIPComp" version))
(sha256
(base32
"0j9nif7z33qdxf347r9wa62hhz8qs09r2p96x3hg5yz30a10ahqs"))))
(properties `((upstream-name . "ChIPComp")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/ChIPComp")
(synopsis "Quantitative comparison of multiple ChIP-seq datasets")
(description
"ChIPComp implements a statistical method for quantitative comparison of
multiple ChIP-seq datasets. It detects differentially bound sharp binding
sites across multiple conditions considering matching control in ChIP-seq
datasets.")
;; Any version of the GPL.
(license license:gpl3+)))