gnu: Add r-ggbio.

* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
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Ricardo Wurmus 2017-11-07 15:34:33 +01:00
parent 7af1f40373
commit 60faf94597
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@ -9716,6 +9716,58 @@ high-level packages for biological data visualization. This saves development
effort and encourages consistency.") effort and encourages consistency.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-ggbio
(package
(name "r-ggbio")
(version "1.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ggbio" version))
(sha256
(base32
"1bqxfqy0hff87ax92z4lfbjz01ndrz7x8pzm6dlkdmi52p30krm9"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationfilter" ,r-annotationfilter)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-biovizbase" ,r-biovizbase)
("r-bsgenome" ,r-bsgenome)
("r-ensembldb" ,r-ensembldb)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggally" ,r-ggally)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-gtable" ,r-gtable)
("r-hmisc" ,r-hmisc)
("r-iranges" ,r-iranges)
("r-organismdbi" ,r-organismdbi)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "http://www.tengfei.name/ggbio/")
(synopsis "Visualization tools for genomic data")
(description
"The ggbio package extends and specializes the grammar of graphics for
biological data. The graphics are designed to answer common scientific
questions, in particular those often asked of high throughput genomics data.
All core Bioconductor data structures are supported, where appropriate. The
package supports detailed views of particular genomic regions, as well as
genome-wide overviews. Supported overviews include ideograms and grand linear
views. High-level plots include sequence fragment length, edge-linked
interval to data view, mismatch pileup, and several splicing summaries.")
(license license:artistic2.0)))
(define-public r-qvalue (define-public r-qvalue
(package (package
(name "r-qvalue") (name "r-qvalue")