gnu: Add r-ggbio.
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
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@ -9716,6 +9716,58 @@ high-level packages for biological data visualization. This saves development
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effort and encourages consistency.")
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effort and encourages consistency.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-ggbio
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(package
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(name "r-ggbio")
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(version "1.26.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ggbio" version))
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(sha256
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(base32
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"1bqxfqy0hff87ax92z4lfbjz01ndrz7x8pzm6dlkdmi52p30krm9"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-annotationfilter" ,r-annotationfilter)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-biovizbase" ,r-biovizbase)
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("r-bsgenome" ,r-bsgenome)
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("r-ensembldb" ,r-ensembldb)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-ggally" ,r-ggally)
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("r-ggplot2" ,r-ggplot2)
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("r-gridextra" ,r-gridextra)
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("r-gtable" ,r-gtable)
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("r-hmisc" ,r-hmisc)
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("r-iranges" ,r-iranges)
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("r-organismdbi" ,r-organismdbi)
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("r-reshape2" ,r-reshape2)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "http://www.tengfei.name/ggbio/")
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(synopsis "Visualization tools for genomic data")
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(description
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"The ggbio package extends and specializes the grammar of graphics for
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biological data. The graphics are designed to answer common scientific
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questions, in particular those often asked of high throughput genomics data.
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All core Bioconductor data structures are supported, where appropriate. The
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package supports detailed views of particular genomic regions, as well as
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genome-wide overviews. Supported overviews include ideograms and grand linear
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views. High-level plots include sequence fragment length, edge-linked
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interval to data view, mismatch pileup, and several splicing summaries.")
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(license license:artistic2.0)))
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(define-public r-qvalue
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(define-public r-qvalue
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(package
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(package
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(name "r-qvalue")
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(name "r-qvalue")
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