From 6213e4418557dfece72c8aa12468490e68618d3b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 13 Mar 2019 13:04:11 +0100 Subject: [PATCH] gnu: Add r-noiseq. * gnu/packages/bioconductor.scm (r-noiseq): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index af7259330c..15173e1659 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2020,3 +2020,30 @@ differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.") (license license:artistic2.0))) + +(define-public r-noiseq + (package + (name "r-noiseq") + (version "2.26.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "NOISeq" version)) + (sha256 + (base32 + "1wyhhi9ydlbjlz427093mdp5ppby77n37w5c2iyxlpsdk2m2nqsn")))) + (properties `((upstream-name . "NOISeq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-matrix" ,r-matrix))) + (home-page "https://bioconductor.org/packages/NOISeq") + (synopsis "Exploratory analysis and differential expression for RNA-seq data") + (description + "This package provides tools to support the analysis of RNA-seq +expression data or other similar kind of data. It provides exploratory plots +to evaluate saturation, count distribution, expression per chromosome, type of +detected features, features length, etc. It also supports the analysis of +differential expression between two experimental conditions with no parametric +assumptions.") + (license license:artistic2.0)))